This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = CAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127538 (3 seq.)
>W131159562
AQVE01000010
Gammaproteobacteria
Thiolinea disciformis DSM 14473 [AQVE]
42445
42361
-
Leu
CAA
[ENA]
¡û
>WENV079727
AATN01000047
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
5150
5238
+
Leu
CAA
[ENA]
>W1710602264
FUYB01000021
Gammaproteobacteria
Thiothrix eikelboomii [FUYB]
30253
30167
-
Leu
CAA
[ENA]
¡û
Identical group No.132206 (8 seq.)
>C10101134
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
2867429
2867343
-
Leu
CAA
[Ensembl]
¡û
>W1610506442
FLQX01000162
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
5841
5755
-
Leu
CAA
[ENA]
¡û
>WENV079771
AATN01000388
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
3592
3506
-
Leu
CAA
[ENA]
>WENV079951
AATO01000005
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
30938
31024
+
Leu
CAA
[ENA]
>WENV080047
AATO01002116
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
434
348
-
Leu
CAA
[ENA]
>WENV080184
AATO01011291
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
609
695
+
Leu
CAA
[ENA]
>WENV080235
AATO01015364
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
135
221
+
Leu
CAA
[ENA]
>W1710498945
FLQX01000162
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
5841
5755
-
Leu
CAA
[ENA]
¡û
Identical group No.132208 (1 seq.)
>WENV079830
AATN01001795
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1766
1678
-
Leu
CAA
[ENA]
Identical group No.166067 (1 seq.)
>WENV079862
AATN01004083
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
594
681
+
Leu
CAA
[ENA]
Identical group No.228936 (6 seq.)
>WENV181227557
OFDN01017302
[OFDN] hot springs metagenome; Water
970
890
-
Leu
CAA
[ENA]
¢þ
>WENV181838465
OGVN01000633
[OGVN] freshwater metagenome; freshwater
608
688
+
Leu
CAA
[ENA]
¢þ
>WENV181842305
OGVT01000448
[OGVT] freshwater metagenome; freshwater
2943
3023
+
Leu
CAA
[ENA]
¢þ
>WENV079944
AATN01011159
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
203
119
-
Leu
CAA
[ENA]
>W1710549192
FOEI01000008
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
24040
24122
+
Leu
CAA
[ENA]
¡û
>W1710584546
FQVQ01000001
Bacteroidota
Flavobacterium fontis [FQVQ]
323196
323278
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK