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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = CAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.684494 (15 seq.)
>C171085167
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
2936885
2936959
+
Val
CAC
-
¡û
>WENV170561631
CZCA01017774
[CZCA] anaerobic digester metagenome; anaerobic digester
134
208
+
Val
CAC
[ENA]
¢þ
>PHG181003982
KY464836
Podoviridae
Ralstonia phage RS-PI-1 (KY464836)
1158
1232
+
Val
CAC
[ENA]
¡û
>C181164178
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
2144226
2144300
+
Val
CAC
-
¡û
>C10101101
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
727411
727485
+
Val
CAC
[Ensembl]
¡û
>W1610506432
FLQX01000146
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
108338
108412
+
Val
CAC
[ENA]
¡û
>WENV079769
AATN01000346
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
2478
2552
+
Val
CAC
[ENA]
>WENV079922
AATN01008736
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
816
742
-
Val
CAC
[ENA]
>WENV079964
AATO01000033
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
31087
31161
+
Val
CAC
[ENA]
>WENV080007
AATO01000561
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
133
207
+
Val
CAC
[ENA]
>WENV080072
AATO01003301
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1482
1556
+
Val
CAC
[ENA]
>WENV080094
AATO01004555
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
275
201
-
Val
CAC
[ENA]
>W1710498935
FLQX01000146
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
108338
108412
+
Val
CAC
[ENA]
¡û
>W1710539465
FNVJ01000017
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
42639
42713
+
Val
CAC
[ENA]
¡û
>W1710570537
FOVF01000007
Gammaproteobacteria
Dokdonella immobilis [FOVF]
144964
145038
+
Val
CAC
[ENA]
¡û
Identical group No.712775 (4 seq.)
>W131221575
AUAO01000007
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
26610
26684
+
Val
CAC
[ENA]
¡û
>WENV181378963
OFRC01006287
[OFRC] wastewater metagenome; Exp Tend CN 10WW
1327
1401
+
Val
CAC
[ENA]
¢þ
>WENV181381691
OFRF01002645
[OFRF] wastewater metagenome; Exp Tend CN 50WW
2009
1935
-
Val
CAC
[ENA]
¢þ
>WENV079903
AATN01007526
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
374
300
-
Val
CAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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