This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = CAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114526 (16 seq.)
>W141401160
JDSS02000018
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
53947
54033
+
Leu
CAG
[ENA]
¡û
>W141401193
JDST02000018
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
79310
79224
-
Leu
CAG
[ENA]
¡û
>W141402455
JDVG02000637
Betaproteobacteria
Candidatus Accumulibacter phosphatis sp. BA-91 [JDVG]
86
1
-
Leu
CAG
[ENA]
¡û
>W141426783
JEMX01000028
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
146260
146174
-
Leu
CAG
[ENA]
¡û
>W141426813
JEMY01000004
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
115912
115998
+
Leu
CAG
[ENA]
¡û
>W141426861
JEMZ01000290
Betaproteobacteria
Candidatus Accumulibacter sp. BA-94 [JEMZ]
2211
2297
+
Leu
CAG
[ENA]
¡û
>W141451261
JFAW01000002
Betaproteobacteria
Candidatus Accumulibacter sp. SK-11 [JFAW]
29347
29433
+
Leu
CAG
[ENA]
¡û
>W141451313
JFAX01000021
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
85719
85633
-
Leu
CAG
[ENA]
¡û
>W141451321
JFAX01000037
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
1121
1035
-
Leu
CAG
[ENA]
¡û
>C10101119
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4478675
4478761
+
Leu
CAG
[Ensembl]
¡û
>W1511592964
LBIV01000015
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
16652
16566
-
Leu
CAG
[ENA]
¡û
>W1610506426
FLQX01000111
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
87407
87321
-
Leu
CAG
[ENA]
¡û
>WENV079747
AATN01000202
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
7957
7869
-
Leu
CAG
[ENA]
>WENV079947
AATO01000001
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
92781
92693
-
Leu
CAG
[ENA]
>WENV080182
AATO01011127
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
80
168
+
Leu
CAG
[ENA]
>W1710498929
FLQX01000111
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
87407
87321
-
Leu
CAG
[ENA]
¡û
Identical group No.166070 (1 seq.)
>WENV079933
AATN01009597
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
95
180
+
Leu
CAG
[ENA]
Identical group No.196244 (6 seq.)
>W1711386594
MEFO01000026
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
64628
64712
+
Leu
CAG
[ENA]
¡û
>W1711386646
MEFP01000011
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-320 [MEFP]
36291
36207
-
Leu
CAG
[ENA]
¡û
>W1711387506
MEGS01000005
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-25 [MEGS]
92273
92357
+
Leu
CAG
[ENA]
¡û
>W1711506692
MKWQ01000002
Gammaproteobacteria
Xanthomonadales bacterium 69-70 [MKWQ]
92300
92384
+
Leu
CAG
[ENA]
¡û
>WENV181173293
OEIV011351902
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
139
55
-
Leu
CAG
[ENA]
¢þ
>WENV079939
AATN01010541
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
630
716
+
Leu
CAG
[ENA]
Identical group No.198668 (1 seq.)
>WENV079778
AATN01000529
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
258
172
-
Leu
CAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK