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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = CTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.550715 (4 seq.)
>C10101142
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
866080
866005
-
Lys
CTT
[Ensembl]
¡û
>WENV079711
AATN01000008
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
55345
55268
-
Lys
CTT
[ENA]
>WENV079948
AATO01000002
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
43945
43868
-
Lys
CTT
[ENA]
>WENV080222
AATO01013734
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
101
178
+
Lys
CTT
[ENA]
Identical group No.550724 (1 seq.)
>WENV079797
AATN01000971
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
3548
3623
+
Lys
CTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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