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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = GAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465084 (14 seq.)
>W141401159
JDSS02000016
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
59771
59696
-
Phe
GAA
[ENA]
¡û
>W141402441
JDVG02000272
Betaproteobacteria
Candidatus Accumulibacter phosphatis sp. BA-91 [JDVG]
1367
1442
+
Phe
GAA
[ENA]
¡û
>W141426793
JEMX01000064
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
4313
4388
+
Phe
GAA
[ENA]
¡û
>W141426840
JEMY01000050
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
5162
5087
-
Phe
GAA
[ENA]
¡û
>C10101100
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
283938
284013
+
Phe
GAA
[Ensembl]
¡û
>W1511592934
LBIU01000004
Betaproteobacteria
Candidatus Accumulibacter adiacens phosphatis [LBIU]
4009
3934
-
Phe
GAA
[ENA]
¡û
>W1511592980
LBIV01000135
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
3738
3663
-
Phe
GAA
[ENA]
¡û
>W1610506409
FLQX01000010
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
38
113
+
Phe
GAA
[ENA]
¡û
>WENV079734
AATN01000085
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
23957
23880
-
Phe
GAA
[ENA]
>WENV079744
AATN01000124
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1201
1124
-
Phe
GAA
[ENA]
>WENV079954
AATO01000006
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
50963
50886
-
Phe
GAA
[ENA]
>WENV080068
AATO01003049
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1314
1391
+
Phe
GAA
[ENA]
>WENV080153
AATO01009346
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
654
731
+
Phe
GAA
[ENA]
>W1710498912
FLQX01000010
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
38
113
+
Phe
GAA
[ENA]
¡û
Identical group No.491285 (24 seq.)
>W1710876954
LMPS01000001
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
221436
221509
+
Phe
GAA
[ENA]
¡û
>W131221751
AUAS01000003
Bacteroidota
Dyadobacter alkalitolerans DSM 23607 [AUAS]
317987
317914
-
Phe
GAA
[ENA]
¡û
>W131231150
AUIF01000034
Bacteroidota
Runella zeae DSM 19591 [AUIF]
98174
98101
-
Phe
GAA
[ENA]
¡û
>WENV180361099
OBNU01117079
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
132
205
+
Phe
GAA
[ENA]
¢þ
>W141168945
AXVJ01000068
Bacteroidota
Runella limosa DSM 17973 [AXVJ]
20554
20479
-
Phe
GAA
[ENA]
¡û
>W141212164
AZQN01000005
Bacteroidota
Dyadobacter tibetensis Y620-1 [AZQN]
259300
259373
+
Phe
GAA
[ENA]
¡û
>WENV183628415
OOGN01041699
[OOGN] marine metagenome; sea ice
244
171
-
Phe
GAA
[ENA]
¢þ
>WENV183631116
OOGU01033834
[OOGU] marine metagenome; sea ice
774
847
+
Phe
GAA
[ENA]
¢þ
>WENV183748257
PPFU01023021
[PPFU] hypolithon metagenome; Antarctic Hypolithon
4182
4255
+
Phe
GAA
[ENA]
¢þ
>C181179077
CP029480
Bacteroidota
Arcticibacterium luteifluviistationis SM1504 [CP029480]
4139625
4139552
-
Phe
GAA
-
¡û
>C181193434
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
6645671
6645598
-
Phe
GAA
-
¡û
>C191073404
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
470806
470732
-
Phe
GAA
-
¡û
>W141731401
JNJB01000012
Bacteroidota
Dyadobacter crusticola DSM 16708 [JNJB]
228157
228082
-
Phe
GAA
[ENA]
¡û
>W1911701521
QNUL01000011
Bacteroidota
Dyadobacter luteus RS19 [QNUL]
36456
36383
-
Phe
GAA
[ENA]
¡û
>W1810595298
QGDT01000011
Bacteroidota
Dyadobacter jejuensis DSM 100346 [QGDT]
8119
8046
-
Phe
GAA
[ENA]
¡û
>W1810680830
QKSB01000001
Bacteroidota
Putridiphycobacter roseus SM1701 [QKSB]
562052
561979
-
Phe
GAA
[ENA]
¡û
>W1810745148
QOWE01000023
Bacteroidota
Larkinella punicea zzj9 [QOWE]
116287
116214
-
Phe
GAA
[ENA]
¡û
>W1810758678
QPIW01000001
Bacteroidota
Runella aurantiaca YX9 [QPIW]
459453
459379
-
Phe
GAA
[ENA]
¡û
>SRA1027760
SRR035086.188283
454 Sequencing (SRP001807)
429
356
-
Phe
GAA
[SRA]
>C11118886
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
6149563
6149488
-
Phe
GAA
[Ensembl]
¡û
>W1610739300
LMPS01000001
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
221436
221509
+
Phe
GAA
[ENA]
¡û
>WENV079909
AATN01007931
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
794
871
+
Phe
GAA
[ENA]
>W1710540981
FNXY01000005
Bacteroidota
Dyadobacter koreensis [FNXY]
256074
256149
+
Phe
GAA
[ENA]
¡û
>W1710603408
FUZA01000008
Bacteroidota
Dyadobacter psychrophilus [FUZA]
233655
233582
-
Phe
GAA
[ENA]
¡û
Identical group No.529016 (5 seq.)
>W131159574
AQVE01000016
Gammaproteobacteria
Thiolinea disciformis DSM 14473 [AQVE]
81778
81853
+
Phe
GAA
[ENA]
¡û
>C09107594
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
159874
159799
-
Phe
GAA
[Ensembl]
¡û
>C11114227
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
158361
158286
-
Phe
GAA
[Ensembl]
¡û
>WENV079720
AATN01000021
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
39687
39612
-
Phe
GAA
[ENA]
>WENV079845
AATN01002598
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
555
630
+
Phe
GAA
[ENA]
Identical group No.550721 (2 seq.)
>WENV180356351
OBNK01016721
[OBNK] sediment metagenome; sediment
151
78
-
Phe
GAA
[ENA]
¢þ
>WENV079783
AATN01000567
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
4614
4539
-
Phe
GAA
[ENA]
Identical group No.550722 (1 seq.)
>WENV079787
AATN01000719
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
2579
2656
+
Phe
GAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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