This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = GAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98872 (1 seq.)
>WENV079802
AATN01001057
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
2163
2074
-
Leu
GAG
[ENA]
Identical group No.98873 (1 seq.)
>WENV079887
AATN01006013
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
452
365
-
Leu
GAG
[ENA]
Identical group No.166065 (1 seq.)
>WENV079725
AATN01000036
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
29041
28954
-
Leu
GAG
[ENA]
Identical group No.166069 (1 seq.)
>WENV079907
AATN01007759
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
587
500
-
Leu
GAG
[ENA]
Identical group No.182370 (10 seq.)
>W141401166
JDSS02000019
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
92232
92316
+
Leu
GAG
[ENA]
¡û
>W141401218
JDST02000103
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
18375
18291
-
Leu
GAG
[ENA]
¡û
>W141426804
JEMX01000171
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
6
90
+
Leu
GAG
[ENA]
¡û
>W141426815
JEMY01000006
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
120418
120334
-
Leu
GAG
[ENA]
¡û
>W141451314
JFAX01000023
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
19126
19210
+
Leu
GAG
[ENA]
¡û
>C10101126
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4326958
4326874
-
Leu
GAG
[Ensembl]
¡û
>W1511592992
LBIV01000271
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
18273
18189
-
Leu
GAG
[ENA]
¡û
>WENV079724
AATN01000024
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1264
1350
+
Leu
GAG
[ENA]
>WENV079960
AATO01000015
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
6536
6450
-
Leu
GAG
[ENA]
>WENV080026
AATO01001030
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1882
1968
+
Leu
GAG
[ENA]
Identical group No.198672 (3 seq.)
>W1610506427
FLQX01000111
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
19677
19593
-
Leu
GAG
[ENA]
¡û
>WENV079891
AATN01006576
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
448
362
-
Leu
GAG
[ENA]
>W1710498930
FLQX01000111
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
19677
19593
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK