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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = GCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360513 (1 seq.)
>WENV079819
AATN01001349
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
2671
2747
+
Cys
GCA
[ENA]
Identical group No.360515 (13 seq.)
>W1711415309
MHAP01000501
Ignavibacteriota
Ignavibacteria bacterium RIFOXYA2_FULL_37_17 [MHAP]
6090
6016
-
Cys
GCA
[ENA]
¡û
>WENV181169278
OEIV010001042
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
90
164
+
Cys
GCA
[ENA]
¢þ
>WENV181229650
OFEK01000014
[OFEK] activated sludge metagenome; Anaerobic digester
305091
305017
-
Cys
GCA
[ENA]
¢þ
>WENV181229673
OFEK01000018
[OFEK] activated sludge metagenome; Anaerobic digester
129049
128975
-
Cys
GCA
[ENA]
¢þ
>WENV181229715
OFEK01000027
[OFEK] activated sludge metagenome; Anaerobic digester
32619
32545
-
Cys
GCA
[ENA]
¢þ
>WENV183666927
ORJL010596890
[ORJL] groundwater metagenome; groundwater
1430
1356
-
Cys
GCA
[ENA]
¢þ
>WENV183668722
ORJL010767758
[ORJL] groundwater metagenome; groundwater
175
101
-
Cys
GCA
[ENA]
¢þ
>WENV183670289
ORJL010930482
[ORJL] groundwater metagenome; groundwater
466
540
+
Cys
GCA
[ENA]
¢þ
>WENV183677942
ORJL011815814
[ORJL] groundwater metagenome; groundwater
111
185
+
Cys
GCA
[ENA]
¢þ
>WENV183684420
ORMF010707716
[ORMF] groundwater metagenome; groundwater
2050
2124
+
Cys
GCA
[ENA]
¢þ
>WENV170553422
CXWK01017919
[CXWK] wastewater metagenome; activated sludge
27411
27487
+
Cys
GCA
[ENA]
¢þ
>WENV170553634
CXWK01025988
[CXWK] wastewater metagenome; activated sludge
4771
4847
+
Cys
GCA
[ENA]
¢þ
>WENV079855
AATN01003659
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
392
316
-
Cys
GCA
[ENA]
Identical group No.782750 (14 seq.)
>WENV181188643
OEOE01245348
[OEOE] activated sludge metagenome; Activated Sludge
164
91
-
Cys
GCA
[ENA]
¢þ
>W141401176
JDSS02000027
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
65288
65361
+
Cys
GCA
[ENA]
¡û
>W141401209
JDST02000066
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
21726
21799
+
Cys
GCA
[ENA]
¡û
>W141402449
JDVG02000465
Betaproteobacteria
Candidatus Accumulibacter phosphatis sp. BA-91 [JDVG]
1519
1446
-
Cys
GCA
[ENA]
¡û
>W141451312
JFAX01000020
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
38978
38905
-
Cys
GCA
[ENA]
¡û
>C10101106
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
1768688
1768761
+
Cys
GCA
[Ensembl]
¡û
>W1511592958
LBIV01000002
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
21768
21841
+
Cys
GCA
[ENA]
¡û
>W1610506412
FLQX01000035
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
200485
200412
-
Cys
GCA
[ENA]
¡û
>WENV079743
AATN01000120
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
19373
19446
+
Cys
GCA
[ENA]
>WENV079806
AATN01001061
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
96
169
+
Cys
GCA
[ENA]
>WENV079898
AATN01007384
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
439
366
-
Cys
GCA
[ENA]
>WENV079958
AATO01000014
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
56951
56878
-
Cys
GCA
[ENA]
>WENV080110
AATO01005751
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
228
301
+
Cys
GCA
[ENA]
>W1710498915
FLQX01000035
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
200485
200412
-
Cys
GCA
[ENA]
¡û
Identical group No.799950 (4 seq.)
>W131159557
AQVE01000007
Gammaproteobacteria
Thiolinea disciformis DSM 14473 [AQVE]
109845
109918
+
Cys
GCA
[ENA]
¡û
>WENV183722280
PDWJ01116091
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1048
1121
+
Cys
GCA
[ENA]
¢þ
>WENV079773
AATN01000490
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1225
1150
-
Cys
GCA
[ENA]
>W1710602262
FUYB01000019
Gammaproteobacteria
Thiothrix eikelboomii [FUYB]
27470
27397
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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