This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = GCT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8427 (11 seq.)
>WENV181189673
OEOF01146243
[OEOF] activated sludge metagenome; Activated Sludge
82
175
+
Ser
GCT
[ENA]
¢þ
>W141426771
JEMX01000006
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
44
137
+
Ser
GCT
[ENA]
¡û
>W141426822
JEMY01000018
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
57080
57173
+
Ser
GCT
[ENA]
¡û
>W141451269
JFAW01000010
Betaproteobacteria
Candidatus Accumulibacter sp. SK-11 [JFAW]
127988
128081
+
Ser
GCT
[ENA]
¡û
>W141451298
JFAX01000005
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
86698
86605
-
Ser
GCT
[ENA]
¡û
>C10101120
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4675041
4675134
+
Ser
GCT
[Ensembl]
¡û
>WENV079721
AATN01000023
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
26109
26016
-
Ser
GCT
[ENA]
>WENV079868
AATN01004641
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
827
734
-
Ser
GCT
[ENA]
>WENV079910
AATN01007966
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
170
77
-
Ser
GCT
[ENA]
>WENV079968
AATO01000038
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
10709
10802
+
Ser
GCT
[ENA]
>WENV080073
AATO01003303
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1451
1544
+
Ser
GCT
[ENA]
Identical group No.10042 (1 seq.)
>WENV079880
AATN01005603
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
219
124
-
Ser
GCT
[ENA]
Identical group No.15864 (1 seq.)
>WENV079849
AATN01002978
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
176
82
-
Ser
GCT
[ENA]
Identical group No.24808 (1 seq.)
>WENV079869
AATN01004742
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
691
598
-
Ser
GCT
[ENA]
Identical group No.37086 (2 seq.)
>WENV079847
AATN01002789
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1779
1687
-
Ser
GCT
[ENA]
>W1710602240
FUYB01000002
Gammaproteobacteria
Thiothrix eikelboomii [FUYB]
110644
110554
-
Ser
GCT
[ENA]
¡û
Identical group No.37967 (1 seq.)
>WENV079861
AATN01004011
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1152
1060
-
Ser
GCT
[ENA]
Identical group No.46195 (18 seq.)
>W1712104775
NIPZ01000126
Alphaproteobacteria
Paracoccus yeei [NIPZ]
4281
4370
+
Ser
GCT
[ENA]
¡û
>C171107659
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
1269992
1270081
+
Ser
GCT
-
¡û
>W141055791
AOSK01000128
Alphaproteobacteria
Rubellimicrobium mesophilum DSM 19309 [AOSK]
16759
16848
+
Ser
GCT
[ENA]
¡û
>W141189652
AYNO01000168
Alphaproteobacteria
Rhodobacter sp. CACIA14H1 [AYNO]
4258
4169
-
Ser
GCT
[ENA]
¡û
>C181099769
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
784238
784327
+
Ser
GCT
-
¡û
>C181190820
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
1261958
1262047
+
Ser
GCT
-
¡û
>C191073589
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
3213313
3213224
-
Ser
GCT
-
¡û
>W09132545
ACNW01000081
Alphaproteobacteria
Citreicella sp. SE45 [ACNW]
16229
16140
-
Ser
GCT
[ENA]
¡û
>W141558878
JHWH01000024
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
34338
34427
+
Ser
GCT
[ENA]
¡û
>WENV025389
AACY020883970
Marine microbial communities from Global Ocean Sampling (GOS)
655
564
-
Ser
GCT
[ENA]
>W1910499787
FXYF01000009
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
109825
109736
-
Ser
GCT
[ENA]
¡û
>W1810503562
QBKF01000009
Alphaproteobacteria
Pararhodobacter aggregans DSM 18938 [QBKF]
24084
23995
-
Ser
GCT
[ENA]
¡û
>W1810535443
QDDR01000009
Alphaproteobacteria
Pararhodobacter aggregans D1-19 [QDDR]
24116
24027
-
Ser
GCT
[ENA]
¡û
>W1810583974
QEYD01000004
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
200982
201071
+
Ser
GCT
[ENA]
¡û
>W1511348798
JRKS01000075
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
11057
11146
+
Ser
GCT
[ENA]
¡û
>W11143037
AEPN01000005
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
815
726
-
Ser
GCT
[ENA]
¡û
>WENV079874
AATN01005130
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1051
960
-
Ser
GCT
[ENA]
>W1710608113
FXAQ01000007
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
169191
169280
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK