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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = GGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13615 (10 seq.)
>W131227543
AUFF01000014
Gammaproteobacteria
Arenimonas composti DSM 18010 [AUFF]
450
358
-
Ser
GGA
[ENA]
¡û
>W1711384950
MEDO01000002
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
77002
76910
-
Ser
GGA
[ENA]
¡û
>W1711386534
MEFO01000004
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
218849
218757
-
Ser
GGA
[ENA]
¡û
>W1711424099
MIDT01000053
Gammaproteobacteria
Xanthomonadales bacterium GWF1_69_6 [MIDT]
2933
2841
-
Ser
GGA
[ENA]
¡û
>W141094230
AVCH01000195
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
1304
1396
+
Ser
GGA
[ENA]
¡û
>W141148247
AWXU01000020
Gammaproteobacteria
Arenimonas composti TR7-09 = DSM 18010 [AWXU]
141742
141650
-
Ser
GGA
[ENA]
¡û
>WENV170712748
LNFM01017256
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1060
968
-
Ser
GGA
[ENA]
¢þ
>W1810354826
PVLF01000001
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
1285
1377
+
Ser
GGA
[ENA]
¡û
>WENV079886
AATN01005947
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
889
795
-
Ser
GGA
[ENA]
>W1710513566
FNAG01000001
Gammaproteobacteria
Aquimonas voraii [FNAG]
405261
405353
+
Ser
GGA
[ENA]
¡û
Identical group No.37087 (2 seq.)
>WENV079768
AATN01000341
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
6415
6323
-
Ser
GGA
[ENA]
>W1710602255
FUYB01000012
Gammaproteobacteria
Thiothrix eikelboomii [FUYB]
1634
1724
+
Ser
GGA
[ENA]
¡û
Identical group No.37966 (5 seq.)
>C10101133
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
3307528
3307438
-
Ser
GGA
[Ensembl]
¡û
>WENV079748
AATN01000208
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
209
117
-
Ser
GGA
[ENA]
>WENV079972
AATO01000072
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
7987
7895
-
Ser
GGA
[ENA]
>WENV079993
AATO01000218
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
6419
6327
-
Ser
GGA
[ENA]
>WENV080137
AATO01008375
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
669
577
-
Ser
GGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK