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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = GGG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282506 (18 seq.)
>WENV181189998
OEOF01385939
[OEOF] activated sludge metagenome; Activated Sludge
214
138
-
Pro
GGG
[ENA]
¢þ
>W141401168
JDSS02000020
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
30806
30730
-
Pro
GGG
[ENA]
¡û
>W141401190
JDST02000007
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
16961
16885
-
Pro
GGG
[ENA]
¡û
>W141402450
JDVG02000478
Betaproteobacteria
Candidatus Accumulibacter phosphatis sp. BA-91 [JDVG]
4935
5011
+
Pro
GGG
[ENA]
¡û
>W141426799
JEMX01000096
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
21413
21337
-
Pro
GGG
[ENA]
¡û
>W141426824
JEMY01000029
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
67809
67733
-
Pro
GGG
[ENA]
¡û
>W141451279
JFAW01000026
Betaproteobacteria
Candidatus Accumulibacter sp. SK-11 [JFAW]
29529
29605
+
Pro
GGG
[ENA]
¡û
>W141451308
JFAX01000016
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
61171
61095
-
Pro
GGG
[ENA]
¡û
>C10101103
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
1390264
1390340
+
Pro
GGG
[Ensembl]
¡û
>W1511592936
LBIU01000056
Betaproteobacteria
Candidatus Accumulibacter adiacens phosphatis [LBIU]
4707
4783
+
Pro
GGG
[ENA]
¡û
>W1511592973
LBIV01000077
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
22806
22882
+
Pro
GGG
[ENA]
¡û
>W1610506408
FLQX01000008
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
24678
24602
-
Pro
GGG
[ENA]
¡û
>WENV079716
AATN01000019
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
34541
34463
-
Pro
GGG
[ENA]
>WENV079961
AATO01000018
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
24879
24957
+
Pro
GGG
[ENA]
>WENV079999
AATO01000445
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
3810
3732
-
Pro
GGG
[ENA]
>WENV080033
AATO01001384
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1995
2073
+
Pro
GGG
[ENA]
>WENV080054
AATO01002237
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
387
465
+
Pro
GGG
[ENA]
>W1710498911
FLQX01000008
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
24678
24602
-
Pro
GGG
[ENA]
¡û
Identical group No.290653 (23 seq.)
>W1710892669
LNDZ01000019
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
36376
36452
+
Pro
GGG
[ENA]
¡û
>W1711326620
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
28604
28528
-
Pro
GGG
[ENA]
¡û
>W131223768
AUCH01000013
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
103372
103296
-
Pro
GGG
[ENA]
¡û
>WENV180357683
OBNN01064809
[OBNN] marine metagenome; Coastal water
385
309
-
Pro
GGG
[ENA]
¢þ
>WENV181585780
OGKG01000028
[OGKG] metagenome; Human gut stool
3078
3002
-
Pro
GGG
[ENA]
¢þ
>WENV181947706
OGZD01022660
[OGZD] human gut metagenome; faeces
300
376
+
Pro
GGG
[ENA]
¢þ
>WENV182083885
OHGP01025576
[OHGP] human gut metagenome; feces
227
303
+
Pro
GGG
[ENA]
¢þ
>WENV182185453
OHOC01021846
[OHOC] human gut metagenome; feces
604
680
+
Pro
GGG
[ENA]
¢þ
>WENV183356339
OLXE01004183
[OLXE] human gut metagenome; feces
3446
3370
-
Pro
GGG
[ENA]
¢þ
>WENV183662893
ORJL010236001
[ORJL] groundwater metagenome; groundwater
366
290
-
Pro
GGG
[ENA]
¢þ
>WENV183670028
ORJL010900402
[ORJL] groundwater metagenome; groundwater
936
860
-
Pro
GGG
[ENA]
¢þ
>WENV183682198
ORMF010409488
[ORMF] groundwater metagenome; groundwater
1104
1028
-
Pro
GGG
[ENA]
¢þ
>WENV183723425
PDYJ01001561
[PDYJ] gut metagenome; fecal pellets
36047
35971
-
Pro
GGG
[ENA]
¢þ
>WENV170652568
JRYH01006748
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1515
1591
+
Pro
GGG
[ENA]
¢þ
>WENV170709243
LNFM01000212
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
119668
119744
+
Pro
GGG
[ENA]
¢þ
>W141557784
JHVK01000020
Betaproteobacteria
Microvirgula aerodenitrificans DSM 15089 [JHVK]
19825
19901
+
Pro
GGG
[ENA]
¡û
>W1910910697
NHMP01000001
Betaproteobacteria
Turicimonas muris YL45 [NHMP]
80849
80773
-
Pro
GGG
[ENA]
¡û
>W1810696533
QLTJ01000018
Betaproteobacteria
Microvirgula sp. AG722 [QLTJ]
42966
42890
-
Pro
GGG
[ENA]
¡û
>C151000930
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
2517165
2517089
-
Pro
GGG
[Ensembl]
¡û
>C161087256
CP015403
Betaproteobacteria
Burkholderiales bacterium YL45 [CP015403]
29322
29246
-
Pro
GGG
[Ensembl]
¡û
>W1610752935
LNDZ01000019
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
36376
36452
+
Pro
GGG
[ENA]
¡û
>W1611063356
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
28604
28528
-
Pro
GGG
[ENA]
¡û
>WENV079848
AATN01002899
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
340
418
+
Pro
GGG
[ENA]
Identical group No.294168 (12 seq.)
>WENV180016354
FSUS01000023
[FSUS] metagenome; soil
118
194
+
Pro
GGG
[ENA]
¢þ
>WENV180019463
FTBX01000267
[FTBX] metagenome; soil
11203
11279
+
Pro
GGG
[ENA]
¢þ
>WENV180019570
FTCC01000936
[FTCC] metagenome; soil
847
923
+
Pro
GGG
[ENA]
¢þ
>WENV181170640
OEIV010069617
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
720
796
+
Pro
GGG
[ENA]
¢þ
>W08006357
ABIZ01000001
Verrucomicrobiota
Verrucomicrobium spinosum DSM 4136 [ABIZ]
2601501
2601428
-
Pro
GGG
[ENA]
¡û
>W141231189
BATQ01000139
Verrucomicrobiota
Verrucomicrobium sp. BvORR034 [BATQ]
22412
22488
+
Pro
GGG
[ENA]
¡û
>W141231228
BATR01000096
Verrucomicrobiota
Verrucomicrobium sp. BvORR106 [BATR]
115685
115609
-
Pro
GGG
[ENA]
¡û
>WENV170009643
APMI01001139
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
41642
41718
+
Pro
GGG
[ENA]
¢þ
>W1810721037
QNRR01000003
Verrucomicrobiota
Roseimicrobium gellanilyticum DSM 25532 [QNRR]
622011
622087
+
Pro
GGG
[ENA]
¡û
>W1610049792
BBFG01000044
Verrucomicrobiota
Verrucomicrobium spinosum DSM 4136 = JCM 18804 [BBFG]
37407
37483
+
Pro
GGG
[ENA]
¡û
>WENV079890
AATN01006476
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
120
198
+
Pro
GGG
[ENA]
>W1710046191
BBFG01000044
Verrucomicrobiota
Verrucomicrobium spinosum DSM 4136 = JCM 18804 [BBFG]
37407
37483
+
Pro
GGG
[ENA]
¡û
Identical group No.303479 (4 seq.)
>W1711386614
MEFO01000039
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
40719
40643
-
Pro
GGG
[ENA]
¡û
>WENV170710690
LNFM01002396
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
27837
27913
+
Pro
GGG
[ENA]
¢þ
>WENV079860
AATN01003949
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
490
412
-
Pro
GGG
[ENA]
>W1710513593
FNAG01000011
Gammaproteobacteria
Aquimonas voraii [FNAG]
35163
35239
+
Pro
GGG
[ENA]
¡û
Identical group No.349898 (2 seq.)
>WENV079730
AATN01000068
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
11797
11719
-
Pro
GGG
[ENA]
>W1710602248
FUYB01000009
Gammaproteobacteria
Thiothrix eikelboomii [FUYB]
80756
80832
+
Pro
GGG
[ENA]
¡û
Identical group No.550730 (1 seq.)
>WENV079881
AATN01005669
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1196
1119
-
Pro
GGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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