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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = GTA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166066 (1 seq.)
>WENV079780
AATN01000560
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
4723
4810
+
Tyr
GTA
[ENA]
Identical group No.182228 (8 seq.)
>W141401162
JDSS02000018
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
289571
289487
-
Tyr
GTA
[ENA]
¡û
>W141426808
JEMY01000002
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
61418
61502
+
Tyr
GTA
[ENA]
¡û
>W141451270
JFAW01000012
Betaproteobacteria
Candidatus Accumulibacter sp. SK-11 [JFAW]
290186
290102
-
Tyr
GTA
[ENA]
¡û
>C10101127
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4022098
4022014
-
Tyr
GTA
[Ensembl]
¡û
>W1610506436
FLQX01000155
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
6778
6862
+
Tyr
GTA
[ENA]
¡û
>WENV079760
AATN01000317
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
9490
9576
+
Tyr
GTA
[ENA]
>WENV080075
AATO01003330
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
261
175
-
Tyr
GTA
[ENA]
>W1710498939
FLQX01000155
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
6778
6862
+
Tyr
GTA
[ENA]
¡û
Identical group No.198671 (1 seq.)
>WENV079829
AATN01001694
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1982
1896
-
Tyr
GTA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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