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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = TAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.78566 (2 seq.)
>WENV079772
AATN01000490
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1134
1044
-
Leu
TAA
[ENA]
>W1710602263
FUYB01000019
Gammaproteobacteria
Thiothrix eikelboomii [FUYB]
27386
27298
-
Leu
TAA
[ENA]
¡û
Identical group No.132205 (3 seq.)
>C10101109
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
2148350
2148436
+
Leu
TAA
[Ensembl]
¡û
>WENV079731
AATN01000080
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
21781
21695
-
Leu
TAA
[ENA]
>WENV079976
AATO01000096
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
8927
9013
+
Leu
TAA
[ENA]
Identical group No.132207 (1 seq.)
>WENV079822
AATN01001515
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1319
1405
+
Leu
TAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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