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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = TAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182230 (16 seq.)
>WENV181188401
OEOE01120441
[OEOE] activated sludge metagenome; Activated Sludge
250
333
+
Leu
TAG
[ENA]
¢þ
>W141426796
JEMX01000078
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
57284
57368
+
Leu
TAG
[ENA]
¡û
>W141426814
JEMY01000004
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
234369
234285
-
Leu
TAG
[ENA]
¡û
>W141451281
JFAW01000028
Betaproteobacteria
Candidatus Accumulibacter sp. SK-11 [JFAW]
13629
13713
+
Leu
TAG
[ENA]
¡û
>W141451299
JFAX01000007
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
68866
68782
-
Leu
TAG
[ENA]
¡û
>C10101107
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
2106087
2106171
+
Leu
TAG
[Ensembl]
¡û
>W1511592947
LBIU01000246
Betaproteobacteria
Candidatus Accumulibacter adiacens phosphatis [LBIU]
85
1
-
Leu
TAG
[ENA]
¡û
>W1610506428
FLQX01000117
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
31642
31726
+
Leu
TAG
[ENA]
¡û
>WENV079710
AATN01000006
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
20282
20198
-
Leu
TAG
[ENA]
>WENV079965
AATO01000035
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
33990
33906
-
Leu
TAG
[ENA]
>WENV080085
AATO01004196
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
662
576
-
Leu
TAG
[ENA]
>WENV080141
AATO01009101
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
472
388
-
Leu
TAG
[ENA]
>WENV080145
AATO01009185
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
627
543
-
Leu
TAG
[ENA]
>WENV080202
AATO01012044
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
331
415
+
Leu
TAG
[ENA]
>WENV080208
AATO01012710
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
211
127
-
Leu
TAG
[ENA]
>W1710498931
FLQX01000117
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
31642
31726
+
Leu
TAG
[ENA]
¡û
Identical group No.198669 (1 seq.)
>WENV079798
AATN01000971
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
3655
3739
+
Leu
TAG
[ENA]
Identical group No.198670 (2 seq.)
>WENV170979709
MTKZ01103366
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
471
387
-
Leu
TAG
[ENA]
¢þ
>WENV079824
AATN01001599
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1812
1896
+
Leu
TAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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