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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = TCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360509 (1 seq.)
>WENV079801
AATN01001057
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
744
668
-
Gly
TCC
[ENA]
Identical group No.458453 (37 seq.)
>W1710856724
LLZO01000110
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
621
546
-
Gly
TCC
[ENA]
¡û
>W1710856748
LLZP01000010
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
83515
83590
+
Gly
TCC
[ENA]
¡û
>W1710859006
LMBR01000170
Chlorobiota
Chlorobium limicola [LMBR]
13149
13222
+
Gly
TCC
[ENA]
¡û
>W1711167332
LVWG01000034
Chlorobiota
Pelodictyon luteolum [LVWG]
77097
77170
+
Gly
TCC
[ENA]
¡û
>W1711505237
MKVH01000024
Unclassified
'Candidatus Kapabacteria' thiocyanatum sp. 59-99 [MKVH]
73932
74005
+
Gly
TCC
[ENA]
¡û
>W1711626107
MPJE01000115
Chlorobiota
Chlorobium sp. KB01 [MPJE]
89666
89739
+
Gly
TCC
[ENA]
¡û
>C005307
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
2354706
2354631
-
Gly
TCC
[Ensembl]
¡û
>C006606
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
2793147
2793075
-
Gly
TCC
[Ensembl]
¡û
>C016734
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
193418
193490
+
Gly
TCC
[Ensembl]
¡û
>C018240
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
265126
265198
+
Gly
TCC
[Ensembl]
¡û
>w018042
AASE01000013
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
2497
2574
+
Gly
TCC
[ENA]
¡û
>w007213
AAIK01000038
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
7131
7054
-
Gly
TCC
[ENA]
¡û
>WENV180284936
OBID01167156
[OBID] metagenome; sludge
300
373
+
Gly
TCC
[ENA]
¢þ
>WENV181189703
OEOF01166796
[OEOF] activated sludge metagenome; Activated Sludge
90
17
-
Gly
TCC
[ENA]
¢þ
>WENV181377928
OFRA01049061
[OFRA] wastewater metagenome; Lake Maggiore Verbania
261
188
-
Gly
TCC
[ENA]
¢þ
>WENV181848612
OGVZ01014484
[OGVZ] freshwater metagenome; freshwater
894
967
+
Gly
TCC
[ENA]
¢þ
>C08003509
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
2451671
2451598
-
Gly
TCC
[Ensembl]
¡û
>C08003794
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
1299929
1300004
+
Gly
TCC
[Ensembl]
¡û
>C08007686
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
293222
293297
+
Gly
TCC
[Ensembl]
¡û
>WENV183516607
OMKS01216280
[OMKS] sediment metagenome; hot spring sediment
488
414
-
Gly
TCC
[ENA]
¢þ
>WENV183812104
PYLN01000027
[PYLN] freshwater metagenome; meromictic lake
4561
4488
-
Gly
TCC
[ENA]
¢þ
>WENV170557535
CXWL01029650
[CXWL] groundwater metagenome; biofilm material
2941
2866
-
Gly
TCC
[ENA]
¢þ
>WENV170613833
FUWD012820896
[FUWD] metagenome; unknown
4313
4240
-
Gly
TCC
[ENA]
¢þ
>WENV170624193
FUWD013177341
[FUWD] metagenome; unknown
46894
46821
-
Gly
TCC
[ENA]
¢þ
>WENV170632476
FUWD013383120
[FUWD] metagenome; unknown
46894
46821
-
Gly
TCC
[ENA]
¢þ
>WENV170979268
MTKZ01083214
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1801
1876
+
Gly
TCC
[ENA]
¢þ
>WENV170987990
MWVX01332998
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
352
277
-
Gly
TCC
[ENA]
¢þ
>WENV170993176
MWWB01206206
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
152
227
+
Gly
TCC
[ENA]
¢þ
>W09102654
AAIB01000008
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
95120
95193
+
Gly
TCC
[ENA]
¡û
>W09103377
AAJD01000025
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
4364
4291
-
Gly
TCC
[ENA]
¡û
>SRA1005185
SRR006907.90097
metagenomic water samples (SRP000427)
84
159
+
Gly
TCC
[SRA]
>SRA1005317
SRR006907.173682
metagenomic water samples (SRP000427)
84
159
+
Gly
TCC
[SRA]
>W1610719105
LLZO01000110
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
621
546
-
Gly
TCC
[ENA]
¡û
>W1610719129
LLZP01000010
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
83515
83590
+
Gly
TCC
[ENA]
¡û
>W1610721352
LMBR01000170
Chlorobiota
Chlorobium limicola [LMBR]
13149
13222
+
Gly
TCC
[ENA]
¡û
>W1610977663
LVWG01000034
Chlorobiota
Pelodictyon luteolum [LVWG]
77097
77170
+
Gly
TCC
[ENA]
¡û
>WENV079781
AATN01000560
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
4828
4903
+
Gly
TCC
[ENA]
Identical group No.780079 (147 seq.)
>W1710860533
LMCY01000021
Betaproteobacteria
Massilia sp. Root335 [LMCY]
90537
90610
+
Gly
TCC
[ENA]
¡û
>W1710860659
LMDB01000007
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
97558
97631
+
Gly
TCC
[ENA]
¡û
>W1710863147
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
478634
478707
+
Gly
TCC
[ENA]
¡û
>W1710864677
LMGB01000011
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
18578
18651
+
Gly
TCC
[ENA]
¡û
>W1710867060
LMHZ01000001
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
1717
1644
-
Gly
TCC
[ENA]
¡û
>W1710867214
LMIC01000003
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
234028
234101
+
Gly
TCC
[ENA]
¡û
>W1710893491
LNEU01000033
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
453
380
-
Gly
TCC
[ENA]
¡û
>W131225117
AUDI01000002
Betaproteobacteria
Pseudoduganella violaceinigra DSM 15887 [AUDI]
708
635
-
Gly
TCC
[ENA]
¡û
>C171088483
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
4333103
4333176
+
Gly
TCC
-
¡û
>C171130506
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
2757056
2757129
+
Gly
TCC
-
¡û
>C010370
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
3138278
3138205
-
Gly
TCC
[Ensembl]
¡û
>C011134
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
3803789
3803716
-
Gly
TCC
[Ensembl]
¡û
>WENV016252
AACY020459264
Marine microbial communities from Global Ocean Sampling (GOS)
1187
1260
+
Gly
TCC
[ENA]
>WENV180017541
FSXF01000451
[FSXF] metagenome; soil
452
379
-
Gly
TCC
[ENA]
¢þ
>WENV180018311
FSYV01000510
[FSYV] metagenome; soil
33375
33448
+
Gly
TCC
[ENA]
¢þ
>WENV180022306
FTFY01000301
[FTFY] metagenome; soil
534
461
-
Gly
TCC
[ENA]
¢þ
>WENV180026557
FTIU01002631
[FTIU] metagenome; soil
122
195
+
Gly
TCC
[ENA]
¢þ
>WENV180032876
FTKD01002429
[FTKD] metagenome; soil
24058
23985
-
Gly
TCC
[ENA]
¢þ
>WENV180110671
OAPN01003123
[OAPN] marine metagenome; 2011
51
124
+
Gly
TCC
[ENA]
¢þ
>WENV180113251
OAPQ01014913
[OAPQ] marine metagenome; ENVO: 00002149
467
394
-
Gly
TCC
[ENA]
¢þ
>WENV180391808
OBPN01051450
[OBPN] marine metagenome; seawater
193
120
-
Gly
TCC
[ENA]
¢þ
>WENV180399243
OBQG01033963
[OBQG] marine metagenome; ENV:00002010
194
267
+
Gly
TCC
[ENA]
¢þ
>W141093984
AVCC01000121
Betaproteobacteria
Herminiimonas sp. CN [AVCC]
261
188
-
Gly
TCC
[ENA]
¡û
>WENV181188320
OEOE01081412
[OEOE] activated sludge metagenome; Activated Sludge
193
120
-
Gly
TCC
[ENA]
¢þ
>WENV181367452
OFQB01001890
[OFQB] freshwater metagenome; Freshwater Lake
1208
1281
+
Gly
TCC
[ENA]
¢þ
>WENV181368137
OFQK01000167
[OFQK] freshwater metagenome; Freshwater Lake
276
203
-
Gly
TCC
[ENA]
¢þ
>WENV181368375
OFQL01001493
[OFQL] freshwater metagenome; Freshwater Lake
1059
986
-
Gly
TCC
[ENA]
¢þ
>WENV181368674
OFQN01000018
[OFQN] freshwater metagenome; Freshwater Lake
32738
32665
-
Gly
TCC
[ENA]
¢þ
>WENV181369528
OFQP01006708
[OFQP] freshwater metagenome; Freshwater Lake
856
929
+
Gly
TCC
[ENA]
¢þ
>WENV181369983
OFQR01004315
[OFQR] freshwater metagenome; Freshwater Lake
328
255
-
Gly
TCC
[ENA]
¢þ
>WENV181370366
OFQS01006016
[OFQS] freshwater metagenome; Freshwater Lake
856
929
+
Gly
TCC
[ENA]
¢þ
>WENV181370609
OFQT01000643
[OFQT] freshwater metagenome; Freshwater Lake
1013
1086
+
Gly
TCC
[ENA]
¢þ
>WENV181375379
OFQY01081047
[OFQY] wastewater metagenome; Exp Tend VB 10WW
298
225
-
Gly
TCC
[ENA]
¢þ
>WENV181385554
OFRI01122735
[OFRI] wastewater metagenome; Exp Tend VB 90WW
434
361
-
Gly
TCC
[ENA]
¢þ
>WENV181388117
OFRM01005478
[OFRM] wastewater metagenome; Exp Tend VB 0WW
1285
1358
+
Gly
TCC
[ENA]
¢þ
>WENV181395796
OFSB01004739
[OFSB] freshwater metagenome; Freshwater Lake
680
753
+
Gly
TCC
[ENA]
¢þ
>WENV181398563
OFSE01000200
[OFSE] wastewater metagenome; Exp Tend VB 50WW
15880
15953
+
Gly
TCC
[ENA]
¢þ
>WENV181839319
OGVO01000720
[OGVO] freshwater metagenome; freshwater
905
978
+
Gly
TCC
[ENA]
¢þ
>WENV181843120
OGVU01000944
[OGVU] freshwater metagenome; freshwater
1745
1672
-
Gly
TCC
[ENA]
¢þ
>W141241315
CAHF01000005
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
265
192
-
Gly
TCC
[ENA]
¡û
>WENV182523003
OIWS01003053
[OIWS] human gut metagenome; faeces
447
374
-
Gly
TCC
[ENA]
¢þ
>WENV182553572
OJCR01012341
[OJCR] seawater metagenome; Sea water
1432
1359
-
Gly
TCC
[ENA]
¢þ
>WENV182564870
OJEF01011531
[OJEF] seawater metagenome; Sea water
795
722
-
Gly
TCC
[ENA]
¢þ
>WENV182572254
OJFL01001947
[OJFL] seawater metagenome; Sea water
272
199
-
Gly
TCC
[ENA]
¢þ
>WENV182579400
OJGS01008194
[OJGS] seawater metagenome; Sea water
183
110
-
Gly
TCC
[ENA]
¢þ
>WENV182586768
OJHK01004600
[OJHK] seawater metagenome; Sea water
285
212
-
Gly
TCC
[ENA]
¢þ
>WENV182591131
OJIK01032617
[OJIK] seawater metagenome; Sea water
419
492
+
Gly
TCC
[ENA]
¢þ
>W141258915
CBXX010000031
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
57847
57920
+
Gly
TCC
[ENA]
¡û
>WENV182896393
OKSN01025146
[OKSN] human gut metagenome; feces
11
84
+
Gly
TCC
[ENA]
¢þ
>WENV183060935
OLHY01015145
[OLHY] seawater metagenome; Sea water
876
949
+
Gly
TCC
[ENA]
¢þ
>WENV183061552
OLHZ01030441
[OLHZ] seawater metagenome; Sea water
411
338
-
Gly
TCC
[ENA]
¢þ
>WENV183648831
OQVS01044369
[OQVS] human gut metagenome; human gut
426
353
-
Gly
TCC
[ENA]
¢þ
>WENV183650752
OQVT01038520
[OQVT] human gut metagenome; human gut
32
105
+
Gly
TCC
[ENA]
¢þ
>WENV183697810
OUNK010144574
[OUNK] metagenome; soil
411
338
-
Gly
TCC
[ENA]
¢þ
>WENV183697877
OUNK010228191
[OUNK] metagenome; soil
287
360
+
Gly
TCC
[ENA]
¢þ
>WENV183733372
PJTY01001400
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
7917
7990
+
Gly
TCC
[ENA]
¢þ
>WENV183739004
PJUE01000861
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
4971
5044
+
Gly
TCC
[ENA]
¢þ
>WENV183744285
PJUK01004678
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
1295
1368
+
Gly
TCC
[ENA]
¢þ
>WENV170140266
CENX01070446
[CENX] marine metagenome genome assembly TARA_018_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10
83
+
Gly
TCC
[ENA]
¢þ
>WENV170146236
CENZ01042328
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
276
203
-
Gly
TCC
[ENA]
¢þ
>WENV170155111
CEOF01433624
[CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1485
1412
-
Gly
TCC
[ENA]
¢þ
>W141401163
JDSS02000018
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
289435
289362
-
Gly
TCC
[ENA]
¡û
>W141426809
JEMY01000002
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
61553
61626
+
Gly
TCC
[ENA]
¡û
>WENV170535275
CEWP01040522
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
688
761
+
Gly
TCC
[ENA]
¢þ
>WENV170558450
CXWL01071333
[CXWL] groundwater metagenome; biofilm material
4513
4586
+
Gly
TCC
[ENA]
¢þ
>WENV170599619
FUWD010082795
[FUWD] metagenome; unknown
281
208
-
Gly
TCC
[ENA]
¢þ
>WENV170617920
FUWD012943735
[FUWD] metagenome; unknown
403
476
+
Gly
TCC
[ENA]
¢þ
>WENV170617922
FUWD012943736
[FUWD] metagenome; unknown
307
380
+
Gly
TCC
[ENA]
¢þ
>WENV170617923
FUWD012943737
[FUWD] metagenome; unknown
28
101
+
Gly
TCC
[ENA]
¢þ
>WENV170639359
JFJP01002045
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
386
313
-
Gly
TCC
[ENA]
¢þ
>WENV170639398
JFJP01002384
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
451
378
-
Gly
TCC
[ENA]
¢þ
>WENV170639518
JFJP01003881
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
7140
7213
+
Gly
TCC
[ENA]
¢þ
>WENV170708408
LNAP01079028
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
189
262
+
Gly
TCC
[ENA]
¢þ
>WENV170708873
LNFM01000012
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
178456
178529
+
Gly
TCC
[ENA]
¢þ
>WENV170866821
MDTB01137761
[MDTB] marine metagenome; seawater
310
237
-
Gly
TCC
[ENA]
¢þ
>WENV170868655
MDTB01165026
[MDTB] marine metagenome; seawater
187114
187041
-
Gly
TCC
[ENA]
¢þ
>WENV170953884
MEHZ011668676
[MEHZ] marine metagenome; marine surface water
327
254
-
Gly
TCC
[ENA]
¢þ
>C181071846
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
5089445
5089372
-
Gly
TCC
-
¡û
>C181078366
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
33455
33528
+
Gly
TCC
-
¡û
>C191138955
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
2620
2547
-
Gly
TCC
-
¡û
>C191157304
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
4138564
4138637
+
Gly
TCC
-
¡û
>W141821361
JQNN01000001
Betaproteobacteria
Massilia sp. 9096 [JQNN]
4695812
4695885
+
Gly
TCC
[ENA]
¡û
>WENV025398
AACY020885003
Marine microbial communities from Global Ocean Sampling (GOS)
545
472
-
Gly
TCC
[ENA]
>W1910548748
FZOT01000001
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
358
285
-
Gly
TCC
[ENA]
¡û
>W1910700069
MESE01000010
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
422
349
-
Gly
TCC
[ENA]
¡û
>W1911572363
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
2804624
2804697
+
Gly
TCC
[ENA]
¡û
>W1911647595
QAJP01000003
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
345
272
-
Gly
TCC
[ENA]
¡û
>W1911802747
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
3473844
3473771
-
Gly
TCC
[ENA]
¡û
>W1911802790
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3260024
3259951
-
Gly
TCC
[ENA]
¡û
>W1911802909
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
2800658
2800585
-
Gly
TCC
[ENA]
¡û
>W1810297200
PTLZ01000001
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
421704
421777
+
Gly
TCC
[ENA]
¡û
>W1810330139
PUIP01000009
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
359
286
-
Gly
TCC
[ENA]
¡û
>W1810659437
QJKB01000002
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
871847
871920
+
Gly
TCC
[ENA]
¡û
>W1810672456
QJTL01000002
Betaproteobacteria
Duganella sp. GV083 [QJTL]
759987
760060
+
Gly
TCC
[ENA]
¡û
>W1810677164
QKMN01000002
Betaproteobacteria
Duganella sp. GV053 [QKMN]
759987
760060
+
Gly
TCC
[ENA]
¡û
>W1810693400
QLLJ01000002
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
759987
760060
+
Gly
TCC
[ENA]
¡û
>W1810694362
QLLZ01000002
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
759987
760060
+
Gly
TCC
[ENA]
¡û
>W1810787968
QREC01000002
Betaproteobacteria
Duganella sp. GV023 [QREC]
450564
450491
-
Gly
TCC
[ENA]
¡û
>W1810885058
QUNB01000002
Betaproteobacteria
Duganella sp. GV032 [QUNB]
760377
760450
+
Gly
TCC
[ENA]
¡û
>W1810885177
QUND01000002
Betaproteobacteria
Duganella sp. GV046 [QUND]
760377
760450
+
Gly
TCC
[ENA]
¡û
>W1810885811
QUNP01000002
Betaproteobacteria
Duganella sp. GV038 [QUNP]
760377
760450
+
Gly
TCC
[ENA]
¡û
>W1810886068
QUNU01000003
Betaproteobacteria
Duganella sp. GV067 [QUNU]
239765
239838
+
Gly
TCC
[ENA]
¡û
>W1810887535
QUQN01000006
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
317724
317797
+
Gly
TCC
[ENA]
¡û
>C151062579
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
457743
457816
+
Gly
TCC
[Ensembl]
¡û
>C151082371
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
4808366
4808293
-
Gly
TCC
-
¡û
>WENV031260
AACY021351668
Marine microbial communities from Global Ocean Sampling (GOS)
331
258
-
Gly
TCC
[ENA]
>C10101128
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4021963
4021890
-
Gly
TCC
[Ensembl]
¡û
>C11105054
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
485826
485899
+
Gly
TCC
[Ensembl]
¡û
>W1511310184
JPQD01000006
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
295
222
-
Gly
TCC
[ENA]
¡û
>W11143212
AEPR01000233
Betaproteobacteria
Oxalobacteraceae bacterium IMCC9480 [AEPR]
9637
9709
+
Gly
TCC
[ENA]
¡û
>W1511592989
LBIV01000259
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
298
225
-
Gly
TCC
[ENA]
¡û
>W1511683777
LFLS01000023
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
260
187
-
Gly
TCC
[ENA]
¡û
>W1511683845
LFLT01000055
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
276
203
-
Gly
TCC
[ENA]
¡û
>W1511683887
LFLU01000009
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
202643
202716
+
Gly
TCC
[ENA]
¡û
>C161043151
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
524522
524595
+
Gly
TCC
-
¡û
>C161053575
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
689287
689360
+
Gly
TCC
[Ensembl]
¡û
>C161053623
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
303518
303591
+
Gly
TCC
-
¡û
>C161053670
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
487161
487234
+
Gly
TCC
[Ensembl]
¡û
>C161053718
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
303548
303621
+
Gly
TCC
[Ensembl]
¡û
>C161053768
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
415224
415297
+
Gly
TCC
[Ensembl]
¡û
>WENV057472
AACY023295671
Marine microbial communities from Global Ocean Sampling (GOS)
1141
1214
+
Gly
TCC
[ENA]
>W121061978
AJHH01000675
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
14358
14285
-
Gly
TCC
[ENA]
¡û
>W121085170
AKJA01000073
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
297
224
-
Gly
TCC
[ENA]
¡û
>W121086400
AKJW01000102
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
332
259
-
Gly
TCC
[ENA]
¡û
>W1610070451
BCTG01000052
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
277
204
-
Gly
TCC
[ENA]
¡û
>W1610506437
FLQX01000155
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
6920
6993
+
Gly
TCC
[ENA]
¡û
>W1610722879
LMCY01000021
Betaproteobacteria
Massilia sp. Root335 [LMCY]
90537
90610
+
Gly
TCC
[ENA]
¡û
>W1610723005
LMDB01000007
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
97558
97631
+
Gly
TCC
[ENA]
¡û
>W1610725493
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
478634
478707
+
Gly
TCC
[ENA]
¡û
>W1610727023
LMGB01000011
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
18578
18651
+
Gly
TCC
[ENA]
¡û
>W1610729406
LMHZ01000001
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
1717
1644
-
Gly
TCC
[ENA]
¡û
>W1610729560
LMIC01000003
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
234028
234101
+
Gly
TCC
[ENA]
¡û
>W1610753757
LNEU01000033
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
453
380
-
Gly
TCC
[ENA]
¡û
>WENV079761
AATN01000317
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
9626
9699
+
Gly
TCC
[ENA]
>WENV080074
AATO01003330
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
125
52
-
Gly
TCC
[ENA]
>W1710067824
BCTG01000052
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
277
204
-
Gly
TCC
[ENA]
¡û
>W1710498940
FLQX01000155
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
6920
6993
+
Gly
TCC
[ENA]
¡û
>W1710512865
FMZS01000013
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
197757
197830
+
Gly
TCC
[ENA]
¡û
>W1710515871
FNCD01000008
Betaproteobacteria
Duganella sp. OV458 [FNCD]
329520
329593
+
Gly
TCC
[ENA]
¡û
>W1710519295
FNEQ01000004
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
164485
164412
-
Gly
TCC
[ENA]
¡û
>W1710530386
FNOR01000035
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
596
523
-
Gly
TCC
[ENA]
¡û
>W1710545168
FOBG01000003
Betaproteobacteria
Duganella sp. CF402 [FOBG]
414526
414453
-
Gly
TCC
[ENA]
¡û
>W1710556472
FOKF01000070
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
530
457
-
Gly
TCC
[ENA]
¡û
>W1710557527
FOLC01000004
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
15712
15785
+
Gly
TCC
[ENA]
¡û
>W1710561500
FOOF01000003
Betaproteobacteria
Duganella sp. CF458 [FOOF]
142362
142289
-
Gly
TCC
[ENA]
¡û
>W1710564238
FOQI01000020
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
84300
84373
+
Gly
TCC
[ENA]
¡û
>W1710593039
FRCX01000012
Betaproteobacteria
Duganella sacchari [FRCX]
182511
182584
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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