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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = TTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342340 (11 seq.)
>WENV180728521
ODGU01057035
[ODGU] human metagenome; G_DNA_Supragingival plaque
473
397
-
Gln
TTG
[ENA]
¢þ
>WENV180847805
ODKT01181799
[ODKT] human metagenome; G_DNA_Supragingival plaque
200
124
-
Gln
TTG
[ENA]
¢þ
>WENV181395559
OFSA01005060
[OFSA] freshwater metagenome; Freshwater Lake
88
164
+
Gln
TTG
[ENA]
¢þ
>WENV170639278
JFJP01001737
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
39620
39696
+
Gln
TTG
[ENA]
¢þ
>WENV170639514
JFJP01003858
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4007
4083
+
Gln
TTG
[ENA]
¢þ
>C10101116
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
3163008
3163084
+
Gln
TTG
[Ensembl]
¡û
>C131007184
CP003803
Betaproteobacteria
Candidatus Kinetoplastibacterium desouzaii TCC079E [CP003803]
105940
106016
+
Gln
TTG
[Ensembl]
¡û
>W1610506429
FLQX01000127
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
59204
59280
+
Gln
TTG
[ENA]
¡û
>WENV079739
AATN01000109
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
15636
15714
+
Gln
TTG
[ENA]
>WENV079962
AATO01000023
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
8209
8131
-
Gln
TTG
[ENA]
>W1710498932
FLQX01000127
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
59204
59280
+
Gln
TTG
[ENA]
¡û
Identical group No.705267 (2 seq.)
>WENV079728
AATN01000054
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
5459
5533
+
Gln
TTG
[ENA]
>W1710602265
FUYB01000022
Gammaproteobacteria
Thiothrix eikelboomii [FUYB]
40517
40591
+
Gln
TTG
[ENA]
¡û
Identical group No.806102 (1 seq.)
>WENV079893
AATN01006704
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
872
799
-
Gln
TTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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