This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
Anticodon = CAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116925 (3 seq.)
>WENV183748807
PPFU01083668
[PPFU] hypolithon metagenome; Antarctic Hypolithon
716
632
-
Leu
CAA
[ENA]
¢þ
>WENV170009357
APMI01000104
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
657306
657222
-
Leu
CAA
[ENA]
¢þ
>WENV080121
AATO01006921
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
260
348
+
Leu
CAA
[ENA]
Identical group No.132206 (8 seq.)
>C10101134
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
2867429
2867343
-
Leu
CAA
[Ensembl]
¡û
>W1610506442
FLQX01000162
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
5841
5755
-
Leu
CAA
[ENA]
¡û
>WENV079771
AATN01000388
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
3592
3506
-
Leu
CAA
[ENA]
>WENV079951
AATO01000005
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
30938
31024
+
Leu
CAA
[ENA]
>WENV080047
AATO01002116
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
434
348
-
Leu
CAA
[ENA]
>WENV080184
AATO01011291
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
609
695
+
Leu
CAA
[ENA]
>WENV080235
AATO01015364
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
135
221
+
Leu
CAA
[ENA]
>W1710498945
FLQX01000162
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
5841
5755
-
Leu
CAA
[ENA]
¡û
Identical group No.140900 (3 seq.)
>W141426773
JEMX01000009
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
50826
50912
+
Leu
CAA
[ENA]
¡û
>W141426837
JEMY01000044
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
224070
224156
+
Leu
CAA
[ENA]
¡û
>WENV080050
AATO01002142
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
951
1037
+
Leu
CAA
[ENA]
Identical group No.156568 (17 seq.)
>W141216680
AZVB01000010
Gammaproteobacteria
Pseudoxanthomonas sp. J35 [AZVB]
42875
42960
+
Leu
CAA
[ENA]
¡û
>WENV183731817
PJTT01000212
[PJTT] soil metagenome; Soil (2) enriched on wood chips
44896
44981
+
Leu
CAA
[ENA]
¢þ
>WENV183731935
PJTU01000013
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
43335
43250
-
Leu
CAA
[ENA]
¢þ
>WENV183732068
PJTV01000005
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
43335
43250
-
Leu
CAA
[ENA]
¢þ
>WENV183732435
PJTX01000244
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
2509
2424
-
Leu
CAA
[ENA]
¢þ
>WENV183733378
PJTY01001432
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
5630
5715
+
Leu
CAA
[ENA]
¢þ
>WENV183734058
PJTZ01000032
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
43335
43250
-
Leu
CAA
[ENA]
¢þ
>WENV183734822
PJUA01000031
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
43135
43050
-
Leu
CAA
[ENA]
¢þ
>WENV183735536
PJUB01000034
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
43135
43050
-
Leu
CAA
[ENA]
¢þ
>WENV183736109
PJUC01000029
[PJUC] soil metagenome; Soil enriched on filter paper
43135
43050
-
Leu
CAA
[ENA]
¢þ
>WENV183741571
PJUG01000072
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
43291
43206
-
Leu
CAA
[ENA]
¢þ
>WENV183741987
PJUH01000026
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
43291
43206
-
Leu
CAA
[ENA]
¢þ
>WENV183742794
PJUI01000203
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
6619
6704
+
Leu
CAA
[ENA]
¢þ
>WENV183743096
PJUJ01000030
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
43291
43206
-
Leu
CAA
[ENA]
¢þ
>WENV183743910
PJUK01000034
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
43291
43206
-
Leu
CAA
[ENA]
¢þ
>WENV183744647
PJUL01000042
[PJUL] feces metagenome; Chicken feces enriched on filter paper
43291
43206
-
Leu
CAA
[ENA]
¢þ
>WENV080156
AATO01010029
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
410
325
-
Leu
CAA
[ENA]
Identical group No.225325 (1 seq.)
>WENV080112
AATO01005844
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
101
16
-
Leu
CAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK