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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
Anticodon = CAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114526 (16 seq.)
>W141401160
JDSS02000018
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
53947
54033
+
Leu
CAG
[ENA]
¡û
>W141401193
JDST02000018
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
79310
79224
-
Leu
CAG
[ENA]
¡û
>W141402455
JDVG02000637
Betaproteobacteria
Candidatus Accumulibacter phosphatis sp. BA-91 [JDVG]
86
1
-
Leu
CAG
[ENA]
¡û
>W141426783
JEMX01000028
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
146260
146174
-
Leu
CAG
[ENA]
¡û
>W141426813
JEMY01000004
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
115912
115998
+
Leu
CAG
[ENA]
¡û
>W141426861
JEMZ01000290
Betaproteobacteria
Candidatus Accumulibacter sp. BA-94 [JEMZ]
2211
2297
+
Leu
CAG
[ENA]
¡û
>W141451261
JFAW01000002
Betaproteobacteria
Candidatus Accumulibacter sp. SK-11 [JFAW]
29347
29433
+
Leu
CAG
[ENA]
¡û
>W141451313
JFAX01000021
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
85719
85633
-
Leu
CAG
[ENA]
¡û
>W141451321
JFAX01000037
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
1121
1035
-
Leu
CAG
[ENA]
¡û
>C10101119
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4478675
4478761
+
Leu
CAG
[Ensembl]
¡û
>W1511592964
LBIV01000015
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
16652
16566
-
Leu
CAG
[ENA]
¡û
>W1610506426
FLQX01000111
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
87407
87321
-
Leu
CAG
[ENA]
¡û
>WENV079747
AATN01000202
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
7957
7869
-
Leu
CAG
[ENA]
>WENV079947
AATO01000001
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
92781
92693
-
Leu
CAG
[ENA]
>WENV080182
AATO01011127
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
80
168
+
Leu
CAG
[ENA]
>W1710498929
FLQX01000111
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
87407
87321
-
Leu
CAG
[ENA]
¡û
Identical group No.118719 (12 seq.)
>WENV183742876
PJUI01003322
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
276
360
+
Leu
CAG
[ENA]
¢þ
>C181001920
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
4164786
4164870
+
Leu
CAG
-
¡û
>W1810393047
PYAW01000003
Bacteroidota
Chitinophaga niastensis DSM 24859 [PYAW]
616380
616464
+
Leu
CAG
[ENA]
¡û
>W1810695413
QLNL01000009
Bacteroidota
Chitinophaga ginsengisegetis 28_1 [QLNL]
1846
1762
-
Leu
CAG
[ENA]
¡û
>W1810721970
QNTR01000009
Bacteroidota
Chitinophaga arvensicola 10_5 24_1 [QNTR]
1846
1762
-
Leu
CAG
[ENA]
¡û
>WENV079990
AATO01000172
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
4531
4445
-
Leu
CAG
[ENA]
>W1710555290
FOJG01000001
Bacteroidota
Chitinophaga arvensicola [FOJG]
3046066
3045980
-
Leu
CAG
[ENA]
¡û
>W1710559124
FOMK01000002
Bacteroidota
Chitinophaga sp. CF118 [FOMK]
1011210
1011294
+
Leu
CAG
[ENA]
¡û
>W1710559138
FOMK01000006
Bacteroidota
Chitinophaga sp. CF118 [FOMK]
22112
22028
-
Leu
CAG
[ENA]
¡û
>W1710594122
FSRA01000001
Bacteroidota
Chitinophaga niabensis [FSRA]
272368
272282
-
Leu
CAG
[ENA]
¡û
>W1710599390
FTOR01000009
Bacteroidota
Filimonas lacunae [FTOR]
311466
311382
-
Leu
CAG
[ENA]
¡û
>W1710604496
FUZZ01000001
Bacteroidota
Chitinophaga ginsengisegetis [FUZZ]
1702466
1702552
+
Leu
CAG
[ENA]
¡û
Identical group No.190578 (3 seq.)
>W1711386266
MEFC01000070
Alphaproteobacteria
Rhodospirillales bacterium SCN 65-16 [MEFC]
6868
6784
-
Leu
CAG
[ENA]
¡û
>W141244539
CAKO01000038
Alphaproteobacteria
Reyranella massiliensis 521 [CAKO]
558242
558158
-
Leu
CAG
[ENA]
¡û
>WENV080108
AATO01005356
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
213
127
-
Leu
CAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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