This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
Anticodon = CGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32436 (2 seq.)
>WENV170010338
APMI01014256
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1473
1383
-
Ser
CGA
[ENA]
¢þ
>WENV080088
AATO01004325
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
678
770
+
Ser
CGA
[ENA]
Identical group No.38688 (2 seq.)
>WENV183731693
PJTT01000105
[PJTT] soil metagenome; Soil (2) enriched on wood chips
11268
11178
-
Ser
CGA
[ENA]
¢þ
>WENV080043
AATO01001959
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
613
521
-
Ser
CGA
[ENA]
Identical group No.58357 (7 seq.)
>W141426787
JEMX01000042
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
47643
47732
+
Ser
CGA
[ENA]
¡û
>W141426819
JEMY01000010
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
10706
10617
-
Ser
CGA
[ENA]
¡û
>C10101132
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
3602215
3602126
-
Ser
CGA
[Ensembl]
¡û
>W1610506410
FLQX01000021
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
17824
17913
+
Ser
CGA
[ENA]
¡û
>WENV079770
AATN01000383
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
7095
7004
-
Ser
CGA
[ENA]
>WENV079973
AATO01000079
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
22451
22542
+
Ser
CGA
[ENA]
>W1710498913
FLQX01000021
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
17824
17913
+
Ser
CGA
[ENA]
¡û
Identical group No.64153 (5 seq.)
>W1711261657
LYWY01000009
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
20898
20809
-
Ser
CGA
[ENA]
¡û
>W1711261719
LYWZ01000020
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
328243
328332
+
Ser
CGA
[ENA]
¡û
>W1611023632
LYWY01000009
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
20898
20809
-
Ser
CGA
[ENA]
¡û
>W1611023694
LYWZ01000020
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
328243
328332
+
Ser
CGA
[ENA]
¡û
>WENV080083
AATO01003829
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1482
1391
-
Ser
CGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK