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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
Anticodon = CGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464253 (9 seq.)
>W141401189
JDST02000006
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
13182
13257
+
Ala
CGC
[ENA]
¡û
>W141426826
JEMY01000034
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
63391
63466
+
Ala
CGC
[ENA]
¡û
>W141451266
JFAW01000005
Betaproteobacteria
Candidatus Accumulibacter sp. SK-11 [JFAW]
166191
166266
+
Ala
CGC
[ENA]
¡û
>W141451291
JFAX01000002
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
167344
167269
-
Ala
CGC
[ENA]
¡û
>W1511592959
LBIV01000005
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
3065
2990
-
Ala
CGC
[ENA]
¡û
>W1610506441
FLQX01000159
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
28964
28889
-
Ala
CGC
[ENA]
¡û
>WENV080095
AATO01004779
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
138
63
-
Ala
CGC
[ENA]
>WENV080106
AATO01005195
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
981
906
-
Ala
CGC
[ENA]
>W1710498944
FLQX01000159
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
28964
28889
-
Ala
CGC
[ENA]
¡û
Identical group No.477617 (20 seq.)
>W1711718078
MTHD01000004
Betaproteobacteria
Azonexus hydrophilus [MTHD]
116578
116503
-
Ala
CGC
[ENA]
¡û
>C171065568
CP017668
Betaproteobacteria
Jeongeupia sp. USM3 [CP017668]
2195294
2195369
+
Ala
CGC
-
¡û
>W131223587
AUCE01000013
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
124863
124938
+
Ala
CGC
[ENA]
¡û
>W141078527
ATJV01000057
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
33163
33238
+
Ala
CGC
[ENA]
¡û
>WENV181231261
OFEK01016240
[OFEK] activated sludge metagenome; Anaerobic digester
1878
1803
-
Ala
CGC
[ENA]
¢þ
>WENV181311166
OFJB01000098
[OFJB] sludge metagenome; sludge
39384
39309
-
Ala
CGC
[ENA]
¢þ
>WENV183685745
ORMF010892890
[ORMF] groundwater metagenome; groundwater
166224
166149
-
Ala
CGC
[ENA]
¢þ
>WENV170007768
AMWB02156496
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
32974
33049
+
Ala
CGC
[ENA]
¢þ
>WENV170010027
APMI01006971
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9376
9301
-
Ala
CGC
[ENA]
¢þ
>WENV170010451
APMI01017413
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2986
2911
-
Ala
CGC
[ENA]
¢þ
>WENV170688507
LFRM01249045
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
191
116
-
Ala
CGC
[ENA]
¢þ
>C181060437
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
1697016
1696941
-
Ala
CGC
-
¡û
>C181060480
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
4485115
4485040
-
Ala
CGC
-
¡û
>W1910183566
BJNV01000036
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
33070
32995
-
Ala
CGC
[ENA]
¡û
>C141000203
AP013066
Betaproteobacteria
Sulfuricella denitrificans skB26 [AP013066]
28475
28400
-
Ala
CGC
[Ensembl]
¡û
>W1910828088
MWUM01000028
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
1892
1817
-
Ala
CGC
[ENA]
¡û
>W1810679149
QKOE01000005
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
306073
306148
+
Ala
CGC
[ENA]
¡û
>W1510019331
BBWF01000043
Betaproteobacteria
Sulfuricella sp. T08 [BBWF]
5018
4943
-
Ala
CGC
[ENA]
¡û
>W121124652
BAFJ01000008
Betaproteobacteria
Sulfuricella denitrificans skB26 [BAFJ]
150625
150700
+
Ala
CGC
[ENA]
¡û
>WENV080170
AATO01010933
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
460
383
-
Ala
CGC
[ENA]
Identical group No.550718 (7 seq.)
>C10101099
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
151551
151626
+
Ala
CGC
[Ensembl]
¡û
>WENV079752
AATN01000217
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
4887
4810
-
Ala
CGC
[ENA]
>WENV079857
AATN01003813
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
539
462
-
Ala
CGC
[ENA]
>WENV079953
AATO01000006
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
16302
16225
-
Ala
CGC
[ENA]
>WENV080024
AATO01000957
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
882
807
-
Ala
CGC
[ENA]
>WENV080070
AATO01003278
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1297
1372
+
Ala
CGC
[ENA]
>WENV080185
AATO01011324
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
481
406
-
Ala
CGC
[ENA]
Identical group No.593157 (1 seq.)
>WENV080234
AATO01014986
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
226
301
+
Ala
CGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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