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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
Anticodon = CGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465085 (9 seq.)
>W141401210
JDST02000073
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
1472
1397
-
Thr
CGT
[ENA]
¡û
>W141402438
JDVG02000049
Betaproteobacteria
Candidatus Accumulibacter phosphatis sp. BA-91 [JDVG]
1188
1263
+
Thr
CGT
[ENA]
¡û
>W141426843
JEMY01000067
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
34421
34496
+
Thr
CGT
[ENA]
¡û
>SRA1002123
SRR001308.257698
Metagenomic characterization of a wastewater treatment plant (SRP000180)
81
6
-
Thr
CGT
[SRA]
>C10101131
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
3630171
3630096
-
Thr
CGT
[Ensembl]
¡û
>W1511592983
LBIV01000185
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
1373
1298
-
Thr
CGT
[ENA]
¡û
>W1610506423
FLQX01000101
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
71049
71124
+
Thr
CGT
[ENA]
¡û
>WENV079970
AATO01000047
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
5364
5287
-
Thr
CGT
[ENA]
>W1710498926
FLQX01000101
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
71049
71124
+
Thr
CGT
[ENA]
¡û
Identical group No.487482 (35 seq.)
>W1711075414
LSKJ01000837
Alphaproteobacteria
Rhodospirillaceae bacterium CCH5-H10 [LSKJ]
13524
13449
-
Thr
CGT
[ENA]
¡û
>W1711384721
MEDI01000464
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
713
788
+
Thr
CGT
[ENA]
¡û
>WENV180020674
FTCZ01008202
[FTCZ] metagenome; soil
8023
7948
-
Thr
CGT
[ENA]
¢þ
>WENV180253535
OBEQ010551523
[OBEQ] groundwater metagenome; groundwater
2448
2373
-
Thr
CGT
[ENA]
¢þ
>WENV180267053
OBEQ011811814
[OBEQ] groundwater metagenome; groundwater
548
623
+
Thr
CGT
[ENA]
¢þ
>WENV180371642
OBOI01006584
[OBOI] sediment metagenome; sediment
1610
1535
-
Thr
CGT
[ENA]
¢þ
>WENV180690366
OCZS010004034
[OCZS] soil metagenome; soil
368
293
-
Thr
CGT
[ENA]
¢þ
>WENV181165093
OEIR01581160
[OEIR] soil metagenome; soil
168
93
-
Thr
CGT
[ENA]
¢þ
>WENV181223240
OFDC01003776
[OFDC] hot springs metagenome; Water
5798
5723
-
Thr
CGT
[ENA]
¢þ
>WENV181227150
OFDN01002403
[OFDN] hot springs metagenome; Water
5840
5765
-
Thr
CGT
[ENA]
¢þ
>W141244546
CAKO01000042
Alphaproteobacteria
Reyranella massiliensis 521 [CAKO]
164058
164133
+
Thr
CGT
[ENA]
¡û
>WENV183664650
ORJL010397047
[ORJL] groundwater metagenome; groundwater
1368
1442
+
Thr
CGT
[ENA]
¢þ
>WENV183666613
ORJL010568034
[ORJL] groundwater metagenome; groundwater
359
284
-
Thr
CGT
[ENA]
¢þ
>WENV183667352
ORJL010641094
[ORJL] groundwater metagenome; groundwater
24
99
+
Thr
CGT
[ENA]
¢þ
>WENV183668235
ORJL010722138
[ORJL] groundwater metagenome; groundwater
536
461
-
Thr
CGT
[ENA]
¢þ
>WENV183673781
ORJL011317726
[ORJL] groundwater metagenome; groundwater
35505
35430
-
Thr
CGT
[ENA]
¢þ
>WENV183674693
ORJL011421276
[ORJL] groundwater metagenome; groundwater
13
88
+
Thr
CGT
[ENA]
¢þ
>WENV183677197
ORJL011724730
[ORJL] groundwater metagenome; groundwater
2254
2329
+
Thr
CGT
[ENA]
¢þ
>WENV170002422
AGTN01026238
[AGTN] bioreactor metagenome; poplar biomass
227
302
+
Thr
CGT
[ENA]
¢þ
>WENV170003830
AGTN01465237
[AGTN] bioreactor metagenome; poplar biomass
106
31
-
Thr
CGT
[ENA]
¢þ
>WENV170707281
LNAP01016661
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3506
3431
-
Thr
CGT
[ENA]
¢þ
>WENV170711720
LNFM01006752
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10187
10112
-
Thr
CGT
[ENA]
¢þ
>WENV170713130
LNFM01024507
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5903
5828
-
Thr
CGT
[ENA]
¢þ
>WENV170713864
LNFM01045074
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1133
1208
+
Thr
CGT
[ENA]
¢þ
>WENV170714203
LNFM01060339
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2359
2284
-
Thr
CGT
[ENA]
¢þ
>WENV170714415
LNFM01072442
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1956
1881
-
Thr
CGT
[ENA]
¢þ
>WENV170714915
LNFM01114971
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18
93
+
Thr
CGT
[ENA]
¢þ
>WENV170715015
LNFM01125213
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
76
1
-
Thr
CGT
[ENA]
¢þ
>WENV170715057
LNFM01129365
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19
94
+
Thr
CGT
[ENA]
¢þ
>W1910698358
MEMN01000135
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 [MEMN]
34164
34239
+
Thr
CGT
[ENA]
¡û
>W1610914719
LSKJ01000837
Alphaproteobacteria
Rhodospirillaceae bacterium CCH5-H10 [LSKJ]
13524
13449
-
Thr
CGT
[ENA]
¡û
>WENV080097
AATO01004806
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
939
1016
+
Thr
CGT
[ENA]
>WENV080211
AATO01012994
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
506
429
-
Thr
CGT
[ENA]
>W1710548241
FODP01000020
Alphaproteobacteria
Rhodospirillales bacterium URHD0017 [FODP]
14241
14166
-
Thr
CGT
[ENA]
¡û
>W1710600374
FUWJ01000010
Alphaproteobacteria
Enhydrobacter aerosaccus [FUWJ]
724
649
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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