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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782750 (14 seq.)
>WENV181188643
OEOE01245348
[OEOE] activated sludge metagenome; Activated Sludge
164
91
-
Cys
GCA
[ENA]
¢þ
>W141401176
JDSS02000027
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
65288
65361
+
Cys
GCA
[ENA]
¡û
>W141401209
JDST02000066
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
21726
21799
+
Cys
GCA
[ENA]
¡û
>W141402449
JDVG02000465
Betaproteobacteria
Candidatus Accumulibacter phosphatis sp. BA-91 [JDVG]
1519
1446
-
Cys
GCA
[ENA]
¡û
>W141451312
JFAX01000020
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
38978
38905
-
Cys
GCA
[ENA]
¡û
>C10101106
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
1768688
1768761
+
Cys
GCA
[Ensembl]
¡û
>W1511592958
LBIV01000002
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
21768
21841
+
Cys
GCA
[ENA]
¡û
>W1610506412
FLQX01000035
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
200485
200412
-
Cys
GCA
[ENA]
¡û
>WENV079743
AATN01000120
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
19373
19446
+
Cys
GCA
[ENA]
>WENV079806
AATN01001061
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
96
169
+
Cys
GCA
[ENA]
>WENV079898
AATN01007384
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
439
366
-
Cys
GCA
[ENA]
>WENV079958
AATO01000014
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
56951
56878
-
Cys
GCA
[ENA]
>WENV080110
AATO01005751
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
228
301
+
Cys
GCA
[ENA]
>W1710498915
FLQX01000035
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
200485
200412
-
Cys
GCA
[ENA]
¡û
Identical group No.789703 (6 seq.)
>W141426780
JEMX01000013
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
30935
31008
+
Cys
GCA
[ENA]
¡û
>W141426836
JEMY01000044
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
89772
89845
+
Cys
GCA
[ENA]
¡û
>WENV170551307
CXWJ01003607
[CXWJ] wastewater metagenome; activated sludge
1614
1541
-
Cys
GCA
[ENA]
¢þ
>W1510021337
BBYR01000001
Betaproteobacteria
Piscinibacter sakaiensis 201-F6 [BBYR]
121409
121482
+
Cys
GCA
[ENA]
¡û
>W1511705379
LGRD01000024
Betaproteobacteria
Methylibium sp. NZG [LGRD]
92867
92940
+
Cys
GCA
[ENA]
¡û
>WENV080008
AATO01000562
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1476
1403
-
Cys
GCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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