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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
Anticodon = GTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280814 (7 seq.)
>WENV180285826
OBID01743713
[OBID] metagenome; sludge
152
78
-
His
GTG
[ENA]
¢þ
>WENV170551743
CXWJ01020211
[CXWJ] wastewater metagenome; activated sludge
131
207
+
His
GTG
[ENA]
¢þ
>WENV170551807
CXWJ01024037
[CXWJ] wastewater metagenome; activated sludge
2774
2849
+
His
GTG
[ENA]
¢þ
>WENV170985856
MWVX01004700
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
313
388
+
His
GTG
[ENA]
¢þ
>WENV170988387
MWVX01475915
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
240
166
-
His
GTG
[ENA]
¢þ
>WENV170991543
MWWA01232428
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
294
368
+
His
GTG
[ENA]
¢þ
>WENV080104
AATO01005019
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1081
1159
+
His
GTG
[ENA]
Identical group No.593149 (2 seq.)
>C10101138
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
2667439
2667364
-
His
GTG
[Ensembl]
¡û
>WENV079983
AATO01000124
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
13667
13744
+
His
GTG
[ENA]
Identical group No.593150 (2 seq.)
>W141426846
JEMY01000067
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
29163
29088
-
His
GTG
[ENA]
¡û
>WENV080036
AATO01001608
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
349
426
+
His
GTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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