This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.676298 (15 seq.)
>W131063632
ANKZ01000001
Gammaproteobacteria
Spiribacter salinus M19-40 [ANKZ]
375329
375255
-
Val
CAC
[ENA]
¡û
>WENV180071940
MPLZ02271930
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
10049
9975
-
Val
CAC
[ENA]
¢þ
>ENV08000064
ABLU01124545
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
37
110
+
Val
CAC
[ENA]
¡û
>WENV183800077
PVBE010563612
[PVBE] marine metagenome; water
13134
13208
+
Val
CAC
[ENA]
¢þ
>WENV170680472
LFCJ01012272
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
49
123
+
Val
CAC
[ENA]
¢þ
>WENV170680546
LFCJ01014586
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5174
5100
-
Val
CAC
[ENA]
¢þ
>WENV170680547
LFCJ01014586
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
4312
4238
-
Val
CAC
[ENA]
¢þ
>WENV170682254
LFFM01007985
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5569
5495
-
Val
CAC
[ENA]
¢þ
>WENV170682276
LFFM01008450
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
49
123
+
Val
CAC
[ENA]
¢þ
>WENV170682277
LFFM01008450
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
911
985
+
Val
CAC
[ENA]
¢þ
>WENV170704179
LKMJ01024453
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5048
4974
-
Val
CAC
[ENA]
¢þ
>WENV170704180
LKMJ01024453
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4186
4112
-
Val
CAC
[ENA]
¢þ
>C141004254
CP005990
Gammaproteobacteria
Spiribacter curvatus UAH-SP71 [CP005990]
1283582
1283656
+
Val
CAC
[Ensembl]
¡û
>W1810586397
QFFI01000020
Gammaproteobacteria
Spiribacter halobius E85 [QFFI]
34874
34948
+
Val
CAC
[ENA]
¡û
>C131016226
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
1164391
1164465
+
Val
CAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK