This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = CCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291360 (63 seq.)
>W1710877752
LMQJ01000034
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
361506
361582
+
Arg
CCG
[ENA]
¡û
>W1711073436
LSIN01000280
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
6818
6894
+
Arg
CCG
[ENA]
¡û
>W1711504477
MKUP01000012
Betaproteobacteria
Burkholderiales bacterium 67-32 [MKUP]
30920
30844
-
Arg
CCG
[ENA]
¡û
>W1711505332
MKVK01000019
Alphaproteobacteria
Magnetospirillum sp. 64-120 [MKVK]
73986
73910
-
Arg
CCG
[ENA]
¡û
>C171110770
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
2438634
2438710
+
Arg
CCG
-
¡û
>W131217295
ATWP01000001
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
54148
54072
-
Arg
CCG
[ENA]
¡û
>W131228660
AUGD01000001
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
1075271
1075347
+
Arg
CCG
[ENA]
¡û
>C013342
CP000390
Cyanobacteriota
Chelativorans sp. BNC1 [CP000390]
4214784
4214708
-
Arg
CCG
[Ensembl]
¡û
>W141007449
AGWX01000004
Alphaproteobacteria
Afipia broomeae ATCC 49717 [AGWX]
1338671
1338747
+
Arg
CCG
[ENA]
¡û
>W141007549
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
3234466
3234390
-
Arg
CCG
[ENA]
¡û
>WENV180396604
OBPV01032550
[OBPV] marine metagenome; ENVO:00002010
227
151
-
Arg
CCG
[ENA]
¢þ
>WENV180636016
OCRE01040967
[OCRE] marine metagenome; Seawater
98
174
+
Arg
CCG
[ENA]
¢þ
>W141063690
APJD01000035
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
40435
40359
-
Arg
CCG
[ENA]
¡û
>W141093624
AVBK01000037
Alphaproteobacteria
Afipia sp. NBIMC_P1-C1 [AVBK]
8187
8111
-
Arg
CCG
[ENA]
¡û
>W141093667
AVBL01000032
Alphaproteobacteria
Afipia sp. NBIMC_P1-C2 [AVBL]
16682
16606
-
Arg
CCG
[ENA]
¡û
>W141093710
AVBM01000023
Alphaproteobacteria
Afipia sp. NBIMC_P1-C3 [AVBM]
8194
8118
-
Arg
CCG
[ENA]
¡û
>WENV181308187
OFIS01000517
[OFIS] sludge metagenome; sludge
19437
19361
-
Arg
CCG
[ENA]
¢þ
>WENV181311161
OFJB01000090
[OFJB] sludge metagenome; sludge
266
342
+
Arg
CCG
[ENA]
¢þ
>WENV181379383
OFRD01000985
[OFRD] wastewater metagenome; Exp Tend CN 100WW
4759
4683
-
Arg
CCG
[ENA]
¢þ
>WENV181384014
OFRH01006441
[OFRH] wastewater metagenome; Exp Tend NO 100WW
508
584
+
Arg
CCG
[ENA]
¢þ
>WENV181385008
OFRI01025373
[OFRI] wastewater metagenome; Exp Tend VB 90WW
470
394
-
Arg
CCG
[ENA]
¢þ
>WENV181385944
OFRL01000183
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
25724
25648
-
Arg
CCG
[ENA]
¢þ
>WENV181399999
OFSF01000665
[OFSF] wastewater metagenome; Exp Tend VB 100WW
12138
12062
-
Arg
CCG
[ENA]
¢þ
>WENV181401358
OFTX01000037
[OFTX] sludge metagenome; sludge
25421
25497
+
Arg
CCG
[ENA]
¢þ
>WENV181402105
OFTY01000120
[OFTY] sludge metagenome; sludge
62291
62367
+
Arg
CCG
[ENA]
¢þ
>WENV182406268
OIEX01007931
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
142
218
+
Arg
CCG
[ENA]
¢þ
>WENV182407714
OIFD01001479
[OIFD] human gut metagenome; stool
343
419
+
Arg
CCG
[ENA]
¢þ
>WENV182409011
OIFG01000375
[OIFG] human gut metagenome; stool
855
779
-
Arg
CCG
[ENA]
¢þ
>WENV182411275
OIFO01000451
[OIFO] human gut metagenome; stool
45
121
+
Arg
CCG
[ENA]
¢þ
>WENV182411941
OIFQ01002658
[OIFQ] human gut metagenome; stool
593
669
+
Arg
CCG
[ENA]
¢þ
>WENV182412655
OIFV01003457
[OIFV] human gut metagenome; stool
460
384
-
Arg
CCG
[ENA]
¢þ
>W141244534
CAKO01000035
Alphaproteobacteria
Reyranella massiliensis 521 [CAKO]
208291
208367
+
Arg
CCG
[ENA]
¡û
>W141261742
CCAZ010000283
Alphaproteobacteria
Afipia felis [CCAZ]
34448
34372
-
Arg
CCG
[ENA]
¡û
>WENV182951573
OKVU01002574
[OKVU] human gut metagenome; human gut
732
808
+
Arg
CCG
[ENA]
¢þ
>WENV182953503
OKVY01002790
[OKVY] human gut metagenome; human gut
878
954
+
Arg
CCG
[ENA]
¢þ
>WENV182962856
OKWO01001164
[OKWO] human gut metagenome; stool
1385
1309
-
Arg
CCG
[ENA]
¢þ
>WENV182962922
OKWP01000006
[OKWP] human gut metagenome; stool
275552
275628
+
Arg
CCG
[ENA]
¢þ
>WENV182966337
OKWV01000232
[OKWV] human gut metagenome; stool
2329
2405
+
Arg
CCG
[ENA]
¢þ
>ENV08000091
ABLU01245893
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
19
95
+
Arg
CCG
[ENA]
¡û
>WENV183715712
PDWI01257941
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
499
423
-
Arg
CCG
[ENA]
¢þ
>WENV170000083
AERA01007412
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
373
297
-
Arg
CCG
[ENA]
¢þ
>WENV170122664
CENN01156749
[CENN] marine metagenome genome assembly TARA_023_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
552
476
-
Arg
CCG
[ENA]
¢þ
>WENV170132300
CENT01056594
[CENT] marine metagenome genome assembly TARA_007_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
671
747
+
Arg
CCG
[ENA]
¢þ
>WENV170652371
JRYH01001692
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
43181
43105
-
Arg
CCG
[ENA]
¢þ
>C181175685
CP029176
Alphaproteobacteria
Acidibrevibacterium fodinaquatile G45-3 [CP029176]
309569
309645
+
Arg
CCG
-
¡û
>W141531734
JHEH01000051
Alphaproteobacteria
Thioclava dalianensis [JHEH]
353
429
+
Arg
CCG
[ENA]
¡û
>C191220329
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
2961859
2961935
+
Arg
CCG
-
¡û
>W09101252
AAED02000007
Alphaproteobacteria
Chelativorans sp. BNC1 BNC1 [AAED]
252716
252792
+
Arg
CCG
[ENA]
¡û
>C09106316
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
3108900
3108824
-
Arg
CCG
[Ensembl]
¡û
>W1910693437
MDEP01000036
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
40996
40920
-
Arg
CCG
[ENA]
¡û
>C151079177
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
3911158
3911082
-
Arg
CCG
[Ensembl]
¡û
>W10119547
ADVZ01000001
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
1234266
1234342
+
Arg
CCG
[ENA]
¡û
>WENV11100441
AERA01007412
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
373
297
-
Arg
CCG
[ENA]
¡û
>W1511361485
JSBN01000031
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
101498
101574
+
Arg
CCG
[ENA]
¡û
>W11125813
ADVZ01000001
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
1234266
1234342
+
Arg
CCG
[ENA]
¡û
>W1511507970
JXOF01000172
Alphaproteobacteria
Bradyrhizobium elkanii UASWS1015 [JXOF]
166016
166092
+
Arg
CCG
[ENA]
¡û
>W11143038
AEPN01000010
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
43482
43406
-
Arg
CCG
[ENA]
¡û
>W1610071218
BCTX01000006
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
91273
91197
-
Arg
CCG
[ENA]
¡û
>W1610740098
LMQJ01000034
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
361506
361582
+
Arg
CCG
[ENA]
¡û
>W1610912741
LSIN01000280
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
6818
6894
+
Arg
CCG
[ENA]
¡û
>W1710068583
BCTX01000006
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
91273
91197
-
Arg
CCG
[ENA]
¡û
>W1710516654
FNCS01000004
Alphaproteobacteria
Pelagibacterium luteolum [FNCS]
35796
35720
-
Arg
CCG
[ENA]
¡û
>W1710570336
FOVB01000012
Alphaproteobacteria
Thioclava dalianensis [FOVB]
47064
46988
-
Arg
CCG
[ENA]
¡û
Identical group No.341061 (1 seq.)
>ENV08000066
ABLU01127968
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
17
93
+
Arg
CCG
[ENA]
¡û
Identical group No.529289 (1 seq.)
>ENV08000086
ABLU01210171
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
90
15
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK