tRNA genes clustered and arranged according to each identical group

microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)

Anticodon = CCG

HIT: 3 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.291360 (63 seq.)
>W1710877752 LMQJ01000034 Alphaproteobacteria Bradyrhizobium sp. Leaf396 [LMQJ] 361506 361582 + Arg CCG [ENA] ¡û
>W1711073436 LSIN01000280 Alphaproteobacteria Bradyrhizobium sp. CCH10-C7 [LSIN] 6818 6894 + Arg CCG [ENA] ¡û
>W1711504477 MKUP01000012 Betaproteobacteria Burkholderiales bacterium 67-32 [MKUP] 30920 30844 - Arg CCG [ENA] ¡û
>W1711505332 MKVK01000019 Alphaproteobacteria Magnetospirillum sp. 64-120 [MKVK] 73986 73910 - Arg CCG [ENA] ¡û
>C171110770 CP020612 Alphaproteobacteria Paracoccus contaminans RKI 16-01929T [CP020612] 2438634 2438710 + Arg CCG - ¡û
>W131217295 ATWP01000001 Alphaproteobacteria Bradyrhizobium japonicum is5 [ATWP] 54148 54072 - Arg CCG [ENA] ¡û
>W131228660 AUGD01000001 Alphaproteobacteria Bradyrhizobium japonicum in8p8 [AUGD] 1075271 1075347 + Arg CCG [ENA] ¡û
>C013342 CP000390 Cyanobacteriota Chelativorans sp. BNC1 [CP000390] 4214784 4214708 - Arg CCG [Ensembl] ¡û
>W141007449 AGWX01000004 Alphaproteobacteria Afipia broomeae ATCC 49717 [AGWX] 1338671 1338747 + Arg CCG [ENA] ¡û
>W141007549 AGWZ01000001 Alphaproteobacteria Afipia felis ATCC 53690 [AGWZ] 3234466 3234390 - Arg CCG [ENA] ¡û
>WENV180396604 OBPV01032550 [OBPV] marine metagenome; ENVO:00002010 227 151 - Arg CCG [ENA] ¢þ
>WENV180636016 OCRE01040967 [OCRE] marine metagenome; Seawater 98 174 + Arg CCG [ENA] ¢þ
>W141063690 APJD01000035 Alphaproteobacteria Bradyrhizobium sp. OHSU_III [APJD] 40435 40359 - Arg CCG [ENA] ¡û
>W141093624 AVBK01000037 Alphaproteobacteria Afipia sp. NBIMC_P1-C1 [AVBK] 8187 8111 - Arg CCG [ENA] ¡û
>W141093667 AVBL01000032 Alphaproteobacteria Afipia sp. NBIMC_P1-C2 [AVBL] 16682 16606 - Arg CCG [ENA] ¡û
>W141093710 AVBM01000023 Alphaproteobacteria Afipia sp. NBIMC_P1-C3 [AVBM] 8194 8118 - Arg CCG [ENA] ¡û
>WENV181308187 OFIS01000517 [OFIS] sludge metagenome; sludge 19437 19361 - Arg CCG [ENA] ¢þ
>WENV181311161 OFJB01000090 [OFJB] sludge metagenome; sludge 266 342 + Arg CCG [ENA] ¢þ
>WENV181379383 OFRD01000985 [OFRD] wastewater metagenome; Exp Tend CN 100WW 4759 4683 - Arg CCG [ENA] ¢þ
>WENV181384014 OFRH01006441 [OFRH] wastewater metagenome; Exp Tend NO 100WW 508 584 + Arg CCG [ENA] ¢þ
>WENV181385008 OFRI01025373 [OFRI] wastewater metagenome; Exp Tend VB 90WW 470 394 - Arg CCG [ENA] ¢þ
>WENV181385944 OFRL01000183 [OFRL] wastewater metagenome; Lake Maggiore Cannobio 25724 25648 - Arg CCG [ENA] ¢þ
>WENV181399999 OFSF01000665 [OFSF] wastewater metagenome; Exp Tend VB 100WW 12138 12062 - Arg CCG [ENA] ¢þ
>WENV181401358 OFTX01000037 [OFTX] sludge metagenome; sludge 25421 25497 + Arg CCG [ENA] ¢þ
>WENV181402105 OFTY01000120 [OFTY] sludge metagenome; sludge 62291 62367 + Arg CCG [ENA] ¢þ
>WENV182406268 OIEX01007931 [OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45 142 218 + Arg CCG [ENA] ¢þ
>WENV182407714 OIFD01001479 [OIFD] human gut metagenome; stool 343 419 + Arg CCG [ENA] ¢þ
>WENV182409011 OIFG01000375 [OIFG] human gut metagenome; stool 855 779 - Arg CCG [ENA] ¢þ
>WENV182411275 OIFO01000451 [OIFO] human gut metagenome; stool 45 121 + Arg CCG [ENA] ¢þ
>WENV182411941 OIFQ01002658 [OIFQ] human gut metagenome; stool 593 669 + Arg CCG [ENA] ¢þ
>WENV182412655 OIFV01003457 [OIFV] human gut metagenome; stool 460 384 - Arg CCG [ENA] ¢þ
>W141244534 CAKO01000035 Alphaproteobacteria Reyranella massiliensis 521 [CAKO] 208291 208367 + Arg CCG [ENA] ¡û
>W141261742 CCAZ010000283 Alphaproteobacteria Afipia felis [CCAZ] 34448 34372 - Arg CCG [ENA] ¡û
>WENV182951573 OKVU01002574 [OKVU] human gut metagenome; human gut 732 808 + Arg CCG [ENA] ¢þ
>WENV182953503 OKVY01002790 [OKVY] human gut metagenome; human gut 878 954 + Arg CCG [ENA] ¢þ
>WENV182962856 OKWO01001164 [OKWO] human gut metagenome; stool 1385 1309 - Arg CCG [ENA] ¢þ
>WENV182962922 OKWP01000006 [OKWP] human gut metagenome; stool 275552 275628 + Arg CCG [ENA] ¢þ
>WENV182966337 OKWV01000232 [OKWV] human gut metagenome; stool 2329 2405 + Arg CCG [ENA] ¢þ
>ENV08000091 ABLU01245893 microbial fraction from oxidized sediments of the Soudan Mine (Minnesota) 19 95 + Arg CCG [ENA] ¡û
>WENV183715712 PDWI01257941 [PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z 499 423 - Arg CCG [ENA] ¢þ
>WENV170000083 AERA01007412 [AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant 373 297 - Arg CCG [ENA] ¢þ
>WENV170122664 CENN01156749 [CENN] marine metagenome genome assembly TARA_023_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 552 476 - Arg CCG [ENA] ¢þ
>WENV170132300 CENT01056594 [CENT] marine metagenome genome assembly TARA_007_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 671 747 + Arg CCG [ENA] ¢þ
>WENV170652371 JRYH01001692 [JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and 43181 43105 - Arg CCG [ENA] ¢þ
>C181175685 CP029176 Alphaproteobacteria Acidibrevibacterium fodinaquatile G45-3 [CP029176] 309569 309645 + Arg CCG - ¡û
>W141531734 JHEH01000051 Alphaproteobacteria Thioclava dalianensis [JHEH] 353 429 + Arg CCG [ENA] ¡û
>C191220329 LR536450 Alphaproteobacteria Methylocella tundrae [LR536450] 2961859 2961935 + Arg CCG - ¡û
>W09101252 AAED02000007 Alphaproteobacteria Chelativorans sp. BNC1 BNC1 [AAED] 252716 252792 + Arg CCG [ENA] ¡û
>C09106316 CP001189 Alphaproteobacteria Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189] 3108900 3108824 - Arg CCG [Ensembl] ¡û
>W1910693437 MDEP01000036 Alphaproteobacteria Bradyrhizobium sp. UASWS1016 [MDEP] 40996 40920 - Arg CCG [ENA] ¡û
>C151079177 CP011300 Alphaproteobacteria Devosia sp. H5989 [CP011300] 3911158 3911082 - Arg CCG [Ensembl] ¡û
>W10119547 ADVZ01000001 Alphaproteobacteria Afipia sp. 1NLS2 [ADVZ] 1234266 1234342 + Arg CCG [ENA] ¡û
>WENV11100441 AERA01007412 [AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant 373 297 - Arg CCG [ENA] ¡û
>W1511361485 JSBN01000031 Alphaproteobacteria Sphingomonas sp. Ant H11 [JSBN] 101498 101574 + Arg CCG [ENA] ¡û
>W11125813 ADVZ01000001 Alphaproteobacteria Afipia sp. 1NLS2 [ADVZ] 1234266 1234342 + Arg CCG [ENA] ¡û
>W1511507970 JXOF01000172 Alphaproteobacteria Bradyrhizobium elkanii UASWS1015 [JXOF] 166016 166092 + Arg CCG [ENA] ¡û
>W11143038 AEPN01000010 Alphaproteobacteria Paracoccus sp. TRP [AEPN] 43482 43406 - Arg CCG [ENA] ¡û
>W1610071218 BCTX01000006 Alphaproteobacteria Novosphingobium naphthalenivorans NBRC 102051 [BCTX] 91273 91197 - Arg CCG [ENA] ¡û
>W1610740098 LMQJ01000034 Alphaproteobacteria Bradyrhizobium sp. Leaf396 [LMQJ] 361506 361582 + Arg CCG [ENA] ¡û
>W1610912741 LSIN01000280 Alphaproteobacteria Bradyrhizobium sp. CCH10-C7 [LSIN] 6818 6894 + Arg CCG [ENA] ¡û
>W1710068583 BCTX01000006 Alphaproteobacteria Novosphingobium naphthalenivorans NBRC 102051 [BCTX] 91273 91197 - Arg CCG [ENA] ¡û
>W1710516654 FNCS01000004 Alphaproteobacteria Pelagibacterium luteolum [FNCS] 35796 35720 - Arg CCG [ENA] ¡û
>W1710570336 FOVB01000012 Alphaproteobacteria Thioclava dalianensis [FOVB] 47064 46988 - Arg CCG [ENA] ¡û
Identical group No.341061 (1 seq.)
>ENV08000066 ABLU01127968 microbial fraction from oxidized sediments of the Soudan Mine (Minnesota) 17 93 + Arg CCG [ENA] ¡û
Identical group No.529289 (1 seq.)
>ENV08000086 ABLU01210171 microbial fraction from oxidized sediments of the Soudan Mine (Minnesota) 90 15 - Arg CCG [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK