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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = CGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15134 (1 seq.)
>ENV08000002
ABLU01009365
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
111
19
-
Ser
CGA
[ENA]
¡û
Identical group No.32809 (8 seq.)
>W1710943622
LOPX01000003
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
240157
240067
-
Ser
CGA
[ENA]
¡û
>W1711029578
LRFH01000003
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
240157
240067
-
Ser
CGA
[ENA]
¡û
>WENV181412471
OGCK01000500
[OGCK] hot springs metagenome; hot spring sediment
7785
7695
-
Ser
CGA
[ENA]
¢þ
>ENV08000005
ABLU01012896
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
94
4
-
Ser
CGA
[ENA]
¡û
>ENV08000006
ABLU01016968
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
11
101
+
Ser
CGA
[ENA]
¡û
>W1911817765
QZMT01000001
Gammaproteobacteria
Guyparkeria sp. SCN-R1 [QZMT]
257803
257893
+
Ser
CGA
[ENA]
¡û
>W1610799922
LOPX01000003
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
240157
240067
-
Ser
CGA
[ENA]
¡û
>W1610877846
LRFH01000003
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
240157
240067
-
Ser
CGA
[ENA]
¡û
Identical group No.51807 (4 seq.)
>WENV183512445
OMKS01000488
[OMKS] sediment metagenome; hot spring sediment
36445
36534
+
Ser
CGA
[ENA]
¢þ
>ENV08000051
ABLU01087329
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
22
111
+
Ser
CGA
[ENA]
¡û
>W1810707342
QNGB01000043
Alphaproteobacteria
Roseovarius sp. TE539 [QNGB]
15478
15389
-
Ser
CGA
[ENA]
¡û
>W1710595091
FSRS01000001
Alphaproteobacteria
Rhodovulum sp. ES.010 [FSRS]
846408
846497
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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