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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = CGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314584 (12 seq.)
>W131224502
AUCV01000071
Thermodesulfobacteriota
Desulfogranum japonicum DSM 18378 [AUCV]
987
911
-
Pro
CGG
[ENA]
¡û
>WENV180099137
NIWG01001049
[NIWG] ciliate metagenome; three single ciliate cells amplified by MDA; sediment
418
494
+
Pro
CGG
[ENA]
¢þ
>WENV181413125
OGCK01030899
[OGCK] hot springs metagenome; hot spring sediment
952
1028
+
Pro
CGG
[ENA]
¢þ
>WENV183512642
OMKS01000973
[OMKS] sediment metagenome; hot spring sediment
17150
17226
+
Pro
CGG
[ENA]
¢þ
>ENV08000052
ABLU01091377
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
83
7
-
Pro
CGG
[ENA]
¡û
>ENV08000061
ABLU01106789
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
92
16
-
Pro
CGG
[ENA]
¡û
>WENV183704830
PDWI01000673
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
18559
18483
-
Pro
CGG
[ENA]
¢þ
>WENV183707086
PDWI01006639
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13852
13928
+
Pro
CGG
[ENA]
¢þ
>WENV183716470
PDWJ01000014
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
184859
184783
-
Pro
CGG
[ENA]
¢þ
>WENV183717575
PDWJ01001151
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
13736
13812
+
Pro
CGG
[ENA]
¢þ
>WENV183718827
PDWJ01006790
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6491
6415
-
Pro
CGG
[ENA]
¢þ
>C11107180
CP002364
Thermodesulfobacteriota
Desulfobulbus propionicus DSM 2032 [CP002364]
1892924
1893000
+
Pro
CGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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