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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = CTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341062 (1 seq.)
>ENV08000067
ABLU01128201
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
76
2
-
Lys
CTT
[ENA]
¡û
Identical group No.529284 (5 seq.)
>W1710927044
LOEY01000014
Bacteroidota
Lutibacter sp. BRH_c52 [LOEY]
48377
48452
+
Lys
CTT
[ENA]
¡û
>ENV08000011
ABLU01025177
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
105
30
-
Lys
CTT
[ENA]
¡û
>WENV170006030
AMQJ01015796
[AMQJ] sediment metagenome; subsurface aquifer sediment
300
375
+
Lys
CTT
[ENA]
¢þ
>W1910728229
MGWK01000067
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_35_11 [MGWK]
1997
1924
-
Lys
CTT
[ENA]
¡û
>W1610784586
LOEY01000014
Bacteroidota
Lutibacter sp. BRH_c52 [LOEY]
48377
48452
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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