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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = GCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482640 (13 seq.)
>W1710943642
LOPX01000014
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
331412
331487
+
Gly
GCC
[ENA]
¡û
>W1710943653
LOPX01000016
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
13632
13557
-
Gly
GCC
[ENA]
¡û
>W1711029598
LRFH01000014
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
331412
331487
+
Gly
GCC
[ENA]
¡û
>W1711029609
LRFH01000016
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
13632
13557
-
Gly
GCC
[ENA]
¡û
>WENV181412422
OGCK01000205
[OGCK] hot springs metagenome; hot spring sediment
8551
8626
+
Gly
GCC
[ENA]
¢þ
>WENV183515338
OMKS01057708
[OMKS] sediment metagenome; hot spring sediment
15
90
+
Gly
GCC
[ENA]
¢þ
>ENV08000042
ABLU01073959
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
32
107
+
Gly
GCC
[ENA]
¡û
>W1911817771
QZMT01000004
Gammaproteobacteria
Guyparkeria sp. SCN-R1 [QZMT]
75920
75845
-
Gly
GCC
[ENA]
¡û
>W1911817792
QZMT01000016
Gammaproteobacteria
Guyparkeria sp. SCN-R1 [QZMT]
9912
9837
-
Gly
GCC
[ENA]
¡û
>W1610799942
LOPX01000014
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
331412
331487
+
Gly
GCC
[ENA]
¡û
>W1610799953
LOPX01000016
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
13632
13557
-
Gly
GCC
[ENA]
¡û
>W1610877866
LRFH01000014
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
331412
331487
+
Gly
GCC
[ENA]
¡û
>W1610877877
LRFH01000016
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
13632
13557
-
Gly
GCC
[ENA]
¡û
Identical group No.529287 (1 seq.)
>ENV08000062
ABLU01111694
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
104
28
-
Gly
GCC
[ENA]
¡û
Identical group No.656715 (24 seq.)
>W131224490
AUCV01000028
Thermodesulfobacteriota
Desulfogranum japonicum DSM 18378 [AUCV]
15402
15476
+
Gly
GCC
[ENA]
¡û
>W131224539
AUCW01000022
Thermodesulfobacteriota
Desulfogranum mediterraneum DSM 13871 [AUCW]
15937
16011
+
Gly
GCC
[ENA]
¡û
>W131224540
AUCW01000023
Thermodesulfobacteriota
Desulfogranum mediterraneum DSM 13871 [AUCW]
48170
48096
-
Gly
GCC
[ENA]
¡û
>W1711317447
MAXH01000032
Thermodesulfobacteriota
Desulfobulbaceae bacterium S3730MH12 [MAXH]
261
335
+
Gly
GCC
[ENA]
¡û
>W1711317575
MAXK01000251
Thermodesulfobacteriota
Desulfobulbaceae bacterium S5133MH15 [MAXK]
2978
3052
+
Gly
GCC
[ENA]
¡û
>W1711317714
MAXQ01000006
Thermodesulfobacteriota
Desulfobulbaceae bacterium C00003063 [MAXQ]
2518
2592
+
Gly
GCC
[ENA]
¡û
>WENV180287512
OBIK01096169
[OBIK] hydrothermal vent metagenome; sea water
82
156
+
Gly
GCC
[ENA]
¢þ
>ENV08000007
ABLU01018147
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
128
54
-
Gly
GCC
[ENA]
¡û
>ENV08000009
ABLU01020117
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
127
53
-
Gly
GCC
[ENA]
¡û
>WENV183705519
PDWI01001716
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6560
6486
-
Gly
GCC
[ENA]
¢þ
>WENV183711736
PDWI01078583
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
79
5
-
Gly
GCC
[ENA]
¢þ
>WENV183716123
PDWI01288476
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
287
361
+
Gly
GCC
[ENA]
¢þ
>WENV183716583
PDWJ01000057
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
74217
74291
+
Gly
GCC
[ENA]
¢þ
>WENV183717631
PDWJ01001252
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
31799
31725
-
Gly
GCC
[ENA]
¢þ
>WENV183718923
PDWJ01007711
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1793
1719
-
Gly
GCC
[ENA]
¢þ
>WENV183720054
PDWJ01025461
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
78
152
+
Gly
GCC
[ENA]
¢þ
>WENV170571314
FLOH01000129
[FLOH] marine metagenome; water
201323
201397
+
Gly
GCC
[ENA]
¢þ
>WENV170647101
JQIA01010727
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
2946
2872
-
Gly
GCC
[ENA]
¢þ
>WENV170696299
LGVF01010243
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2518
2592
+
Gly
GCC
[ENA]
¢þ
>WENV170697571
LGVF01156387
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
630
556
-
Gly
GCC
[ENA]
¢þ
>WENV170698364
LGVF01320986
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2123
2049
-
Gly
GCC
[ENA]
¢þ
>WENV170698550
LGVF01359894
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
329
403
+
Gly
GCC
[ENA]
¢þ
>C131010890
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
3964792
3964866
+
Gly
GCC
[Ensembl]
¡û
>W1710525206
FNJI01000041
Thermodesulfobacteriota
Desulforhopalus singaporensis [FNJI]
18896
18822
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK