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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = GCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13365 (9 seq.)
>W1710943633
LOPX01000005
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
12894
12802
-
Ser
GCT
[ENA]
¡û
>W1711029589
LRFH01000005
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
12894
12802
-
Ser
GCT
[ENA]
¡û
>WENV181404207
OGBZ01004027
[OGBZ] sediment metagenome; hot spring sediment
265
357
+
Ser
GCT
[ENA]
¢þ
>WENV181412522
OGCK01001245
[OGCK] hot springs metagenome; hot spring sediment
1738
1830
+
Ser
GCT
[ENA]
¢þ
>ENV08000013
ABLU01030421
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
126
34
-
Ser
GCT
[ENA]
¡û
>ENV08001790
ABOG01000225
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
5
97
+
Ser
GCT
[ENA]
¡û
>W1911817788
QZMT01000013
Gammaproteobacteria
Guyparkeria sp. SCN-R1 [QZMT]
44523
44615
+
Ser
GCT
[ENA]
¡û
>W1610799933
LOPX01000005
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
12894
12802
-
Ser
GCT
[ENA]
¡û
>W1610877857
LRFH01000005
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
12894
12802
-
Ser
GCT
[ENA]
¡û
Identical group No.49665 (11 seq.)
>W131242026
BASI01000005
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
438209
438298
+
Ser
GCT
[ENA]
¡û
>ENV08000023
ABLU01039013
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
8
97
+
Ser
GCT
[ENA]
¡û
>WENV170683180
LFIK01006237
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
4153
4242
+
Ser
GCT
[ENA]
¢þ
>W1910443352
FWFZ01000059
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
4980
5069
+
Ser
GCT
[ENA]
¡û
>W1911538678
OMOQ01000007
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
17924
18013
+
Ser
GCT
[ENA]
¡û
>W1911747131
QWDA01000001
Alphaproteobacteria
Paracoccaceae bacterium IMCC 34051 [QWDA]
159788
159877
+
Ser
GCT
[ENA]
¡û
>W1810356712
PVND01000001
Alphaproteobacteria
Meinhardsimonia xiamenensis DSM 24422 [PVND]
3749
3838
+
Ser
GCT
[ENA]
¡û
>C161087734
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
3516574
3516663
+
Ser
GCT
-
¡û
>C161087783
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
3481071
3481160
+
Ser
GCT
[Ensembl]
¡û
>W1710520707
FNFV01000005
Alphaproteobacteria
Meinhardsimonia xiamenensis xiamenense [FNFV]
314330
314241
-
Ser
GCT
[ENA]
¡û
>W1710595118
FSRS01000001
Alphaproteobacteria
Rhodovulum sp. ES.010 [FSRS]
1667558
1667469
-
Ser
GCT
[ENA]
¡û
Identical group No.49759 (49 seq.)
>W1710796599
LJSG01000002
Alphaproteobacteria
Roseibaca calidilacus HL-91 [LJSG]
125655
125744
+
Ser
GCT
[ENA]
¡û
>W1710797156
LJSU01000023
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
7407
7318
-
Ser
GCT
[ENA]
¡û
>W1710797187
LJSV01000007
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
155552
155641
+
Ser
GCT
[ENA]
¡û
>W1710987784
LPUY01000075
Alphaproteobacteria
Tritonibacter horizontis O3.65 [LPUY]
134715
134626
-
Ser
GCT
[ENA]
¡û
>W1711456288
MJAP01000018
Alphaproteobacteria
Natronohydrobacter thiooxidans [MJAP]
52148
52059
-
Ser
GCT
[ENA]
¡û
>W1711572432
MNBW01000003
Alphaproteobacteria
Nioella nitratireducens [MNBW]
158411
158500
+
Ser
GCT
[ENA]
¡û
>W1711709265
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
533598
533687
+
Ser
GCT
[ENA]
¡û
>W131223011
AUBS01000009
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
102467
102556
+
Ser
GCT
[ENA]
¡û
>w028023
ABCR01000013
Alphaproteobacteria
Roseobacter sp. AzwK-3b [ABCR]
53950
54041
+
Ser
GCT
[ENA]
¡û
>W141020457
AJKJ01000007
Alphaproteobacteria
Citreicella sp. 357 [AJKJ]
371
460
+
Ser
GCT
[ENA]
¡û
>WENV180298602
OBJA01466089
[OBJA] soil metagenome; sediment, water from around vicinity
204
115
-
Ser
GCT
[ENA]
¢þ
>WENV180365328
OBOB01079912
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
208
297
+
Ser
GCT
[ENA]
¢þ
>WENV181233575
OFET01000009
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
298606
298517
-
Ser
GCT
[ENA]
¢þ
>WENV181233760
OFET01000075
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
155509
155598
+
Ser
GCT
[ENA]
¢þ
>WENV181234229
OFEU01000009
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
298606
298517
-
Ser
GCT
[ENA]
¢þ
>WENV181234467
OFEU01000179
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
61308
61397
+
Ser
GCT
[ENA]
¢þ
>W141278739
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
741244
741155
-
Ser
GCT
[ENA]
¡û
>ENV08000038
ABLU01069156
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
22
111
+
Ser
GCT
[ENA]
¡û
>WENV183720932
PDWJ01049677
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2065
1976
-
Ser
GCT
[ENA]
¢þ
>WENV170015683
AZII01002760
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
515
426
-
Ser
GCT
[ENA]
¢þ
>WENV170683491
LFIK01013155
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
163
74
-
Ser
GCT
[ENA]
¢þ
>WENV170705192
LLEQ01000218
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1985
1896
-
Ser
GCT
[ENA]
¢þ
>WENV170937112
MDTG01285977
[MDTG] marine metagenome; seawater
3460
3549
+
Ser
GCT
[ENA]
¢þ
>WENV170963831
MRWG01000901
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
11777
11688
-
Ser
GCT
[ENA]
¢þ
>W1910443124
FWFU01000002
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
119718
119629
-
Ser
GCT
[ENA]
¡û
>W1910500565
FXZK01000004
Alphaproteobacteria
Flavimaricola marinus CECT 8899 [FXZK]
402058
402147
+
Ser
GCT
[ENA]
¡û
>W1911638548
PVWS01000028
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
19246
19157
-
Ser
GCT
[ENA]
¡û
>W1810061268
PDNI01000058
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
218138
218227
+
Ser
GCT
[ENA]
¡û
>W1810494720
QBFD01000022
Alphaproteobacteria
Sulfitobacter sp. DFL-14 [QBFD]
106756
106667
-
Ser
GCT
[ENA]
¡û
>W1810532472
QCYH01000004
Alphaproteobacteria
Pelagivirga sediminicola BH-SD19 [QCYH]
120270
120181
-
Ser
GCT
[ENA]
¡û
>W1810543598
QDKM01000003
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
36019
35930
-
Ser
GCT
[ENA]
¡û
>W1810694764
QLMG01000106
Alphaproteobacteria
Salipiger aestuarii DSM 22011 [QLMG]
1954
1865
-
Ser
GCT
[ENA]
¡û
>W1810719949
QNQP01000022
Alphaproteobacteria
Roseovarius dicentrarchi YLY04 [QNQP]
50405
50494
+
Ser
GCT
[ENA]
¡û
>C161001441
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
1205990
1206079
+
Ser
GCT
[Ensembl]
¡û
>C161001483
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
903583
903494
-
Ser
GCT
[Ensembl]
¡û
>W1610190091
FBYC01000004
Alphaproteobacteria
Roseibaca calidilacus HL-91 [FBYC]
1363301
1363212
-
Ser
GCT
[ENA]
¡û
>W1610660556
LJSG01000002
Alphaproteobacteria
Roseibaca calidilacus HL-91 [LJSG]
125655
125744
+
Ser
GCT
[ENA]
¡û
>W1610661113
LJSU01000023
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
7407
7318
-
Ser
GCT
[ENA]
¡û
>W1610661144
LJSV01000007
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
155552
155641
+
Ser
GCT
[ENA]
¡û
>W1610842728
LPUY01000075
Alphaproteobacteria
Tritonibacter horizontis O3.65 [LPUY]
134715
134626
-
Ser
GCT
[ENA]
¡û
>WENV081118
ABEF01029239
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
396
305
-
Ser
GCT
[ENA]
>W1710083065
BDIY01000021
Alphaproteobacteria
Roseovarius sp. A-2 [BDIY]
3571
3660
+
Ser
GCT
[ENA]
¡û
>W1710191707
FBYC01000004
Alphaproteobacteria
Roseibaca calidilacus HL-91 [FBYC]
1363301
1363212
-
Ser
GCT
[ENA]
¡û
>W1710515029
FNBL01000003
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
190501
190590
+
Ser
GCT
[ENA]
¡û
>W1710524238
FNIO01000004
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
328660
328749
+
Ser
GCT
[ENA]
¡û
>W1710543612
FOAC01000003
Alphaproteobacteria
Roseovarius nanhaiticus [FOAC]
84512
84601
+
Ser
GCT
[ENA]
¡û
>W1710589249
FQZZ01000004
Alphaproteobacteria
Lutimaribacter pacificus [FQZZ]
70282
70193
-
Ser
GCT
[ENA]
¡û
>W1710591907
FRCB01000006
Alphaproteobacteria
Roseovarius litoreus [FRCB]
146312
146401
+
Ser
GCT
[ENA]
¡û
>W1710598220
FTNV01000002
Alphaproteobacteria
Roseovarius nanhaiticus [FTNV]
519802
519713
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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