tRNA genes clustered and arranged according to each identical group

microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)

Anticodon = GCT

HIT: 3 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.13365 (9 seq.)
>W1710943633 LOPX01000005 Gammaproteobacteria Guyparkeria sp. XI15 XI15 [LOPX] 12894 12802 - Ser GCT [ENA] ¡û
>W1711029589 LRFH01000005 Gammaproteobacteria Guyparkeria sp. WRN-7 WRN-7 [LRFH] 12894 12802 - Ser GCT [ENA] ¡û
>WENV181404207 OGBZ01004027 [OGBZ] sediment metagenome; hot spring sediment 265 357 + Ser GCT [ENA] ¢þ
>WENV181412522 OGCK01001245 [OGCK] hot springs metagenome; hot spring sediment 1738 1830 + Ser GCT [ENA] ¢þ
>ENV08000013 ABLU01030421 microbial fraction from oxidized sediments of the Soudan Mine (Minnesota) 126 34 - Ser GCT [ENA] ¡û
>ENV08001790 ABOG01000225 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 5 97 + Ser GCT [ENA] ¡û
>W1911817788 QZMT01000013 Gammaproteobacteria Guyparkeria sp. SCN-R1 [QZMT] 44523 44615 + Ser GCT [ENA] ¡û
>W1610799933 LOPX01000005 Gammaproteobacteria Guyparkeria sp. XI15 XI15 [LOPX] 12894 12802 - Ser GCT [ENA] ¡û
>W1610877857 LRFH01000005 Gammaproteobacteria Guyparkeria sp. WRN-7 WRN-7 [LRFH] 12894 12802 - Ser GCT [ENA] ¡û
Identical group No.49665 (11 seq.)
>W131242026 BASI01000005 Alphaproteobacteria Rhodovulum sulfidophilum DSM 1374 [BASI] 438209 438298 + Ser GCT [ENA] ¡û
>ENV08000023 ABLU01039013 microbial fraction from oxidized sediments of the Soudan Mine (Minnesota) 8 97 + Ser GCT [ENA] ¡û
>WENV170683180 LFIK01006237 [LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5 4153 4242 + Ser GCT [ENA] ¢þ
>W1910443352 FWFZ01000059 Alphaproteobacteria Roseisalinus antarcticus CECT 7023 [FWFZ] 4980 5069 + Ser GCT [ENA] ¡û
>W1911538678 OMOQ01000007 Alphaproteobacteria Defluviimonas aquaemixtae CECT 8626 [OMOQ] 17924 18013 + Ser GCT [ENA] ¡û
>W1911747131 QWDA01000001 Alphaproteobacteria Paracoccaceae bacterium IMCC 34051 [QWDA] 159788 159877 + Ser GCT [ENA] ¡û
>W1810356712 PVND01000001 Alphaproteobacteria Meinhardsimonia xiamenensis DSM 24422 [PVND] 3749 3838 + Ser GCT [ENA] ¡û
>C161087734 CP015418 Alphaproteobacteria Rhodovulum sulfidophilum DSM 1374 [CP015418] 3516574 3516663 + Ser GCT - ¡û
>C161087783 CP015421 Alphaproteobacteria Rhodovulum sulfidophilum SNK001 [CP015421] 3481071 3481160 + Ser GCT [Ensembl] ¡û
>W1710520707 FNFV01000005 Alphaproteobacteria Meinhardsimonia xiamenensis xiamenense [FNFV] 314330 314241 - Ser GCT [ENA] ¡û
>W1710595118 FSRS01000001 Alphaproteobacteria Rhodovulum sp. ES.010 [FSRS] 1667558 1667469 - Ser GCT [ENA] ¡û
Identical group No.49759 (49 seq.)
>W1710796599 LJSG01000002 Alphaproteobacteria Roseibaca calidilacus HL-91 [LJSG] 125655 125744 + Ser GCT [ENA] ¡û
>W1710797156 LJSU01000023 Alphaproteobacteria Rhodobacteraceae bacterium HLUCCO07 [LJSU] 7407 7318 - Ser GCT [ENA] ¡û
>W1710797187 LJSV01000007 Alphaproteobacteria Rhodobacteraceae bacterium HLUCCA12 [LJSV] 155552 155641 + Ser GCT [ENA] ¡û
>W1710987784 LPUY01000075 Alphaproteobacteria Tritonibacter horizontis O3.65 [LPUY] 134715 134626 - Ser GCT [ENA] ¡û
>W1711456288 MJAP01000018 Alphaproteobacteria Natronohydrobacter thiooxidans [MJAP] 52148 52059 - Ser GCT [ENA] ¡û
>W1711572432 MNBW01000003 Alphaproteobacteria Nioella nitratireducens [MNBW] 158411 158500 + Ser GCT [ENA] ¡û
>W1711709265 MSYR01000001 Alphaproteobacteria Rhodovulum sulfidophilum [MSYR] 533598 533687 + Ser GCT [ENA] ¡û
>W131223011 AUBS01000009 Alphaproteobacteria Pseudodonghicola xiamenensis DSM 18339 [AUBS] 102467 102556 + Ser GCT [ENA] ¡û
>w028023 ABCR01000013 Alphaproteobacteria Roseobacter sp. AzwK-3b [ABCR] 53950 54041 + Ser GCT [ENA] ¡û
>W141020457 AJKJ01000007 Alphaproteobacteria Citreicella sp. 357 [AJKJ] 371 460 + Ser GCT [ENA] ¡û
>WENV180298602 OBJA01466089 [OBJA] soil metagenome; sediment, water from around vicinity 204 115 - Ser GCT [ENA] ¢þ
>WENV180365328 OBOB01079912 [OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER 208 297 + Ser GCT [ENA] ¢þ
>WENV181233575 OFET01000009 [OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis 298606 298517 - Ser GCT [ENA] ¢þ
>WENV181233760 OFET01000075 [OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis 155509 155598 + Ser GCT [ENA] ¢þ
>WENV181234229 OFEU01000009 [OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium 298606 298517 - Ser GCT [ENA] ¢þ
>WENV181234467 OFEU01000179 [OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium 61308 61397 + Ser GCT [ENA] ¢þ
>W141278739 JAFT01000005 Alphaproteobacteria Oceanicola sp. HL-35 [JAFT] 741244 741155 - Ser GCT [ENA] ¡û
>ENV08000038 ABLU01069156 microbial fraction from oxidized sediments of the Soudan Mine (Minnesota) 22 111 + Ser GCT [ENA] ¡û
>WENV183720932 PDWJ01049677 [PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J 2065 1976 - Ser GCT [ENA] ¢þ
>WENV170015683 AZII01002760 [AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte 515 426 - Ser GCT [ENA] ¢þ
>WENV170683491 LFIK01013155 [LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5 163 74 - Ser GCT [ENA] ¢þ
>WENV170705192 LLEQ01000218 [LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the 1985 1896 - Ser GCT [ENA] ¢þ
>WENV170937112 MDTG01285977 [MDTG] marine metagenome; seawater 3460 3549 + Ser GCT [ENA] ¢þ
>WENV170963831 MRWG01000901 [MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell 11777 11688 - Ser GCT [ENA] ¢þ
>W1910443124 FWFU01000002 Alphaproteobacteria Roseovarius halotolerans CECT 8110 [FWFU] 119718 119629 - Ser GCT [ENA] ¡û
>W1910500565 FXZK01000004 Alphaproteobacteria Flavimaricola marinus CECT 8899 [FXZK] 402058 402147 + Ser GCT [ENA] ¡û
>W1911638548 PVWS01000028 Alphaproteobacteria Roseovarius sp. A46 [PVWS] 19246 19157 - Ser GCT [ENA] ¡û
>W1810061268 PDNI01000058 Alphaproteobacteria Roseovarius nitratireducens TFZ [PDNI] 218138 218227 + Ser GCT [ENA] ¡û
>W1810494720 QBFD01000022 Alphaproteobacteria Sulfitobacter sp. DFL-14 [QBFD] 106756 106667 - Ser GCT [ENA] ¡û
>W1810532472 QCYH01000004 Alphaproteobacteria Pelagivirga sediminicola BH-SD19 [QCYH] 120270 120181 - Ser GCT [ENA] ¡û
>W1810543598 QDKM01000003 Alphaproteobacteria Pararhodobacter oceanensis AM505 [QDKM] 36019 35930 - Ser GCT [ENA] ¡û
>W1810694764 QLMG01000106 Alphaproteobacteria Salipiger aestuarii DSM 22011 [QLMG] 1954 1865 - Ser GCT [ENA] ¡û
>W1810719949 QNQP01000022 Alphaproteobacteria Roseovarius dicentrarchi YLY04 [QNQP] 50405 50494 + Ser GCT [ENA] ¡û
>C161001441 AP014800 Alphaproteobacteria Rhodovulum sulfidophilum DSM 2351 [AP014800] 1205990 1206079 + Ser GCT [Ensembl] ¡û
>C161001483 AP014800 Alphaproteobacteria Rhodovulum sulfidophilum DSM 2351 [AP014800] 903583 903494 - Ser GCT [Ensembl] ¡û
>W1610190091 FBYC01000004 Alphaproteobacteria Roseibaca calidilacus HL-91 [FBYC] 1363301 1363212 - Ser GCT [ENA] ¡û
>W1610660556 LJSG01000002 Alphaproteobacteria Roseibaca calidilacus HL-91 [LJSG] 125655 125744 + Ser GCT [ENA] ¡û
>W1610661113 LJSU01000023 Alphaproteobacteria Rhodobacteraceae bacterium HLUCCO07 [LJSU] 7407 7318 - Ser GCT [ENA] ¡û
>W1610661144 LJSV01000007 Alphaproteobacteria Rhodobacteraceae bacterium HLUCCA12 [LJSV] 155552 155641 + Ser GCT [ENA] ¡û
>W1610842728 LPUY01000075 Alphaproteobacteria Tritonibacter horizontis O3.65 [LPUY] 134715 134626 - Ser GCT [ENA] ¡û
>WENV081118 ABEF01029239 Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) 396 305 - Ser GCT [ENA]
>W1710083065 BDIY01000021 Alphaproteobacteria Roseovarius sp. A-2 [BDIY] 3571 3660 + Ser GCT [ENA] ¡û
>W1710191707 FBYC01000004 Alphaproteobacteria Roseibaca calidilacus HL-91 [FBYC] 1363301 1363212 - Ser GCT [ENA] ¡û
>W1710515029 FNBL01000003 Alphaproteobacteria Celeribacter baekdonensis [FNBL] 190501 190590 + Ser GCT [ENA] ¡û
>W1710524238 FNIO01000004 Alphaproteobacteria Lutimaribacter pacificus [FNIO] 328660 328749 + Ser GCT [ENA] ¡û
>W1710543612 FOAC01000003 Alphaproteobacteria Roseovarius nanhaiticus [FOAC] 84512 84601 + Ser GCT [ENA] ¡û
>W1710589249 FQZZ01000004 Alphaproteobacteria Lutimaribacter pacificus [FQZZ] 70282 70193 - Ser GCT [ENA] ¡û
>W1710591907 FRCB01000006 Alphaproteobacteria Roseovarius litoreus [FRCB] 146312 146401 + Ser GCT [ENA] ¡û
>W1710598220 FTNV01000002 Alphaproteobacteria Roseovarius nanhaiticus [FTNV] 519802 519713 - Ser GCT [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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