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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = GGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32808 (4 seq.)
>WENV180346509
OBLN01129879
[OBLN] sediment metagenome; sediment
202
112
-
Ser
GGA
[ENA]
¢þ
>ENV08000012
ABLU01028071
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
125
35
-
Ser
GGA
[ENA]
¡û
>ENV08000021
ABLU01034570
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
104
14
-
Ser
GGA
[ENA]
¡û
>W1911817764
QZMT01000001
Gammaproteobacteria
Guyparkeria sp. SCN-R1 [QZMT]
257647
257737
+
Ser
GGA
[ENA]
¡û
Identical group No.46292 (6 seq.)
>ENV08000063
ABLU01114674
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
20
109
+
Ser
GGA
[ENA]
¡û
>WENV170963505
MRWG01000239
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
11316
11405
+
Ser
GGA
[ENA]
¢þ
>W1911638545
PVWS01000024
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
45359
45448
+
Ser
GGA
[ENA]
¡û
>W1810061286
PDNI01000077
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
17056
16967
-
Ser
GGA
[ENA]
¡û
>W1810707323
QNGB01000007
Alphaproteobacteria
Roseovarius sp. TE539 [QNGB]
166812
166901
+
Ser
GGA
[ENA]
¡û
>W1710548371
FODS01000015
Alphaproteobacteria
Salinihabitans flavidus [FODS]
26299
26388
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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