tRNA genes clustered and arranged according to each identical group

microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)

Anticodon = GGC

HIT: 1 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.280666 (76 seq.)
>W1710821586 LKTP01000003 Bacteroidota Salegentibacter mishustinae [LKTP] 120768 120844 + Ala GGC [ENA] ¡û
>W131229954 AUHF01000001 Bacteroidota Christiangramia portivictoriae DSM 23547 [AUHF] 244082 244158 + Ala GGC [ENA] ¡û
>W131229994 AUHG01000010 Bacteroidota Christiangramia echinicola DSM 19838 [AUHG] 386080 386156 + Ala GGC [ENA] ¡û
>W1711457598 MJBR01000019 Bacteroidota Salegentibacter salarius [MJBR] 49326 49402 + Ala GGC [ENA] ¡û
>W1711696240 MSJR01000001 Bacteroidota Salegentibacter sediminis K5023 [MSJR] 189425 189501 + Ala GGC [ENA] ¡û
>C171018925 CP012872 Bacteroidota Salegentibacter sp. T436 [CP012872] 885520 885444 - Ala GGC - ¡û
>C171074052 CP018153 Bacteroidota Christiangramia salexigens LPB0144 [CP018153] 2268574 2268498 - Ala GGC - ¡û
>WENV181412600 OGCK01002373 [OGCK] hot springs metagenome; hot spring sediment 1083 1159 + Ala GGC [ENA] ¢þ
>ENV08000035 ABLU01057830 microbial fraction from oxidized sediments of the Soudan Mine (Minnesota) 79 3 - Ala GGC [ENA] ¡û
>WENV183729682 PJTR01000014 [PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment 218030 218104 + Ala GGC [ENA] ¢þ
>WENV183730921 PJTS01002067 [PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment 511 437 - Ala GGC [ENA] ¢þ
>WENV183731574 PJTT01000030 [PJTT] soil metagenome; Soil (2) enriched on wood chips 218030 218104 + Ala GGC [ENA] ¢þ
>WENV183732398 PJTX01000107 [PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment 5868 5942 + Ala GGC [ENA] ¢þ
>WENV183732455 PJTX01000450 [PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment 9779 9703 - Ala GGC [ENA] ¢þ
>WENV183734141 PJTZ01000087 [PJTZ] soil metagenome; Soil enriched (2) on filter paper 71831 71757 - Ala GGC [ENA] ¢þ
>WENV183734146 PJTZ01000091 [PJTZ] soil metagenome; Soil enriched (2) on filter paper 39296 39372 + Ala GGC [ENA] ¢þ
>WENV183741031 PJUF01029959 [PJUF] feces metagenome; Chicken feces (3) enriched on wood chips 314 390 + Ala GGC [ENA] ¢þ
>WENV170130817 CENR01030187 [CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 33687 33763 + Ala GGC [ENA] ¢þ
>WENV170176885 CEOS01135259 [CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4595 4519 - Ala GGC [ENA] ¢þ
>WENV170182585 CEOX01227114 [CEOX] marine metagenome genome assembly TARA_065_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1450 1526 + Ala GGC [ENA] ¢þ
>WENV170191602 CEPD01038460 [CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 6213 6137 - Ala GGC [ENA] ¢þ
>WENV170220314 CEPZ01141467 [CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 505 429 - Ala GGC [ENA] ¢þ
>WENV170277917 CERQ01036732 [CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1843 1919 + Ala GGC [ENA] ¢þ
>WENV170308767 CESL01058566 [CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 33531 33455 - Ala GGC [ENA] ¢þ
>WENV170315620 CESO01162269 [CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 457 533 + Ala GGC [ENA] ¢þ
>WENV170336786 CETA01038937 [CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4444 4520 + Ala GGC [ENA] ¢þ
>WENV170338800 CETB01061950 [CETB] marine metagenome genome assembly TARA_112_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 49 125 + Ala GGC [ENA] ¢þ
>WENV170348349 CETG01191864 [CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4444 4520 + Ala GGC [ENA] ¢þ
>WENV170364501 CETM01311869 [CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 100 176 + Ala GGC [ENA] ¢þ
>WENV170365862 CETO01009004 [CETO] marine metagenome genome assembly TARA_122_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 6211 6135 - Ala GGC [ENA] ¢þ
>WENV170371309 CETS01001920 [CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4086 4162 + Ala GGC [ENA] ¢þ
>WENV170373537 CETT01000815 [CETT] marine metagenome genome assembly TARA_110_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 5423 5347 - Ala GGC [ENA] ¢þ
>WENV170378023 CETU01323991 [CETU] marine metagenome genome assembly TARA_142_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 894 818 - Ala GGC [ENA] ¢þ
>WENV170423363 CEUN01399976 [CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1041 1117 + Ala GGC [ENA] ¢þ
>WENV170435418 CEUS01455854 [CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 517 593 + Ala GGC [ENA] ¢þ
>WENV170443739 CEUX01008099 [CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 944 1020 + Ala GGC [ENA] ¢þ
>WENV170446958 CEUY01182837 [CEUY] marine metagenome genome assembly TARA_123_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1246 1170 - Ala GGC [ENA] ¢þ
>WENV170457276 CEVA01338738 [CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 391 467 + Ala GGC [ENA] ¢þ
>WENV170465723 CEVD01549975 [CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 347 271 - Ala GGC [ENA] ¢þ
>WENV170478023 CEVK01003800 [CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 546 470 - Ala GGC [ENA] ¢þ
>WENV170483549 CEVM01126198 [CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 908 832 - Ala GGC [ENA] ¢þ
>WENV170491982 CEVQ01110242 [CEVQ] marine metagenome genome assembly TARA_148b_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 271 347 + Ala GGC [ENA] ¢þ
>WENV170527744 CEWI01262314 [CEWI] marine metagenome genome assembly TARA_111_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2867 2791 - Ala GGC [ENA] ¢þ
>WENV170579128 FUFK010038069 [FUFK] metagenome; unknown 48247 48171 - Ala GGC [ENA] ¢þ
>WENV170588546 FUFK010571266 [FUFK] metagenome; unknown 662 738 + Ala GGC [ENA] ¢þ
>WENV170666746 JYMV01040369 [JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean 115090 115016 - Ala GGC [ENA] ¢þ
>WENV170783489 MAAC01017450 [MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days 65967 65891 - Ala GGC [ENA] ¢þ
>WENV170857152 MDTB01004965 [MDTB] marine metagenome; seawater 4863 4787 - Ala GGC [ENA] ¢þ
>WENV170912464 MDTE01121172 [MDTE] marine metagenome; seawater 2725 2649 - Ala GGC [ENA] ¢þ
>WENV170933469 MDTG01221441 [MDTG] marine metagenome; seawater 81 5 - Ala GGC [ENA] ¢þ
>WENV170937464 MDTG01292318 [MDTG] marine metagenome; seawater 27831 27755 - Ala GGC [ENA] ¢þ
>WENV170944190 MDTG01409730 [MDTG] marine metagenome; seawater 5520 5444 - Ala GGC [ENA] ¢þ
>WENV170990450 MWWA01007074 [MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil 664 740 + Ala GGC [ENA] ¢þ
>C191157556 CP038029 Bacteroidota Sphingobacterium psychroaquaticum SJ-25 [CP038029] 1638725 1638651 - Ala GGC - ¡û
>C191182975 CP040812 Bacteroidota Antarcticibacterium flavum KCTC 52984 [CP040812] 2364786 2364712 - Ala GGC - ¡û
>W141821604 JQNQ01000001 Bacteroidota Salegentibacter sp. Hel_I_6 [JQNQ] 2031297 2031221 - Ala GGC [ENA] ¡û
>W1910626967 LKTR01000022 Bacteroidota Salegentibacter salarius KCTC 12974 [LKTR] 49326 49400 + Ala GGC [ENA] ¡û
>W1910626990 LKTS01000001 Bacteroidota Salegentibacter salinarum KCTC 12975 [LKTS] 164985 164911 - Ala GGC [ENA] ¡û
>W1910634600 LLKN01000002 Bacteroidota Salegentibacter mishustinae DSM 23404 [LLKN] 466022 465948 - Ala GGC [ENA] ¡û
>W1910891614 NEXQ01000024 Bacteroidota Psychroflexus sp. S27 [NEXQ] 23588 23514 - Ala GGC [ENA] ¡û
>W1911496098 OCMF01000001 Bacteroidota Salinimicrobium sediminis CGMCC 1.12641 [OCMF] 826932 827008 + Ala GGC [ENA] ¡û
>W1810346484 PVBQ01000008 Bacteroidota Sphingobacterium haloxyli 5JN-11 [PVBQ] 140604 140678 + Ala GGC [ENA] ¡û
>W1810346570 PVBS01000001 Bacteroidota Sphingobacterium gobiense ACCC 05757 [PVBS] 809602 809676 + Ala GGC [ENA] ¡û
>W1810504124 QBKQ01000001 Bacteroidota Christiangramia gaetbulicola DSM 23082 [QBKQ] 1028489 1028415 - Ala GGC [ENA] ¡û
>W1810686157 QKZW01000008 Bacteroidota Salegentibacter mishustinae DSM 23404 [QKZW] 113826 113752 - Ala GGC [ENA] ¡û
>W1810784255 QRAO01000001 Bacteroidota Marinirhabdus gelatinilytica DSM 101478 [QRAO] 327001 326927 - Ala GGC [ENA] ¡û
>C10114617 CP001650 Bacteroidota Zunongwangia profunda SM-A87 SMA-87 [CP001650] 266649 266725 + Ala GGC [Ensembl] ¡û
>W1511108297 JJMU01000002 Bacteroidota Sphingobacterium deserti ACCC 05744 [JJMU] 239154 239230 + Ala GGC [ENA] ¡û
>W1610685548 LKTP01000003 Bacteroidota Salegentibacter mishustinae [LKTP] 120768 120844 + Ala GGC [ENA] ¡û
>W1710016345 ARYN01000012 Bacteroidota Zunongwangia atlantica 22II14-10F7 [ARYN] 44648 44572 - Ala GGC [ENA] ¡û
>W1710521254 FNGG01000001 Bacteroidota Salinimicrobium catena [FNGG] 612697 612621 - Ala GGC [ENA] ¡û
>W1710538058 FNUG01000001 Bacteroidota Salinimicrobium catena [FNUG] 612729 612653 - Ala GGC [ENA] ¡û
>W1710557275 FOKV01000001 Bacteroidota Zunongwangia mangrovi [FOKV] 423565 423489 - Ala GGC [ENA] ¡û
>W1710576372 FOZZ01000002 Bacteroidota Sphingobacterium wenxiniae [FOZZ] 138743 138667 - Ala GGC [ENA] ¡û
>W1710584691 FQVT01000008 Bacteroidota Salegentibacter echinorum [FQVT] 37645 37571 - Ala GGC [ENA] ¡û
>W1710608352 FXAU01000003 Bacteroidota Sphingobacterium psychroaquaticum [FXAU] 213068 212994 - Ala GGC [ENA] ¡û
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK