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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = GGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301062 (9 seq.)
>W1710798369
LJTJ01000060
Thermodesulfobacteriota
Desulfobacterales bacterium SG8_35 [LJTJ]
2109
2033
-
Pro
GGG
[ENA]
¡û
>W1710798399
LJTK01000198
Nitrospirota
Nitrospira bacterium SG8_35_1 [LJTK]
4333
4409
+
Pro
GGG
[ENA]
¡û
>W1710798434
LJTL01000131
Thermodesulfobacteriota
Desulfobacterales bacterium SG8_35_2 [LJTL]
7992
8068
+
Pro
GGG
[ENA]
¡û
>W1711584334
MNYJ01000038
Thermodesulfobacteriota
Desulfobacteraceae bacterium CG2_30_51_40 [MNYJ]
22074
21998
-
Pro
GGG
[ENA]
¡û
>WENV181413303
OGCK01050057
[OGCK] hot springs metagenome; hot spring sediment
820
896
+
Pro
GGG
[ENA]
¢þ
>ENV08000010
ABLU01020860
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
127
51
-
Pro
GGG
[ENA]
¡û
>W1610662326
LJTJ01000060
Thermodesulfobacteriota
Desulfobacterales bacterium SG8_35 [LJTJ]
2109
2033
-
Pro
GGG
[ENA]
¡û
>W1610662356
LJTK01000198
Nitrospirota
Nitrospira bacterium SG8_35_1 [LJTK]
4333
4409
+
Pro
GGG
[ENA]
¡û
>W1610662391
LJTL01000131
Thermodesulfobacteriota
Desulfobacterales bacterium SG8_35_2 [LJTL]
7992
8068
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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