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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219775 (36 seq.)
>W1710927053
LOEY01000032
Bacteroidota
Lutibacter sp. BRH_c52 [LOEY]
3027
3110
+
Tyr
GTA
[ENA]
¡û
>W1710927060
LOEY01000039
Bacteroidota
Lutibacter sp. BRH_c52 [LOEY]
5042
4959
-
Tyr
GTA
[ENA]
¡û
>W1711621475
MPDD01000006
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G1 [MPDD]
39994
40077
+
Tyr
GTA
[ENA]
¡û
>C171063292
CP017478
Bacteroidota
Urechidicola croceus LPB0138 [CP017478]
1246806
1246723
-
Tyr
GTA
-
¡û
>WENV180384517
OBOY01000800
[OBOY] marine metagenome; Sterile flask
183
264
+
Tyr
GTA
[ENA]
¢þ
>WENV180385650
OBPA01063207
[OBPA] marine metagenome; Sterile flask
156
73
-
Tyr
GTA
[ENA]
¢þ
>WENV182585249
OJHH01004895
[OJHH] seawater metagenome; Sea water
178
95
-
Tyr
GTA
[ENA]
¢þ
>ENV08000073
ABLU01153052
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
13
96
+
Tyr
GTA
[ENA]
¡û
>ENV08000080
ABLU01176511
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
11
94
+
Tyr
GTA
[ENA]
¡û
>WENV183793150
PQDT01008216
[PQDT] marine sediment metagenome; marine sediment
492
411
-
Tyr
GTA
[ENA]
¢þ
>WENV170006018
AMQJ01014913
[AMQJ] sediment metagenome; subsurface aquifer sediment
1200
1283
+
Tyr
GTA
[ENA]
¢þ
>WENV170570457
FLOH01000005
[FLOH] marine metagenome; water
1262133
1262216
+
Tyr
GTA
[ENA]
¢þ
>WENV170570874
FLOH01000032
[FLOH] marine metagenome; water
438322
438403
+
Tyr
GTA
[ENA]
¢þ
>WENV170572267
FLOH01000675
[FLOH] marine metagenome; water
27760
27677
-
Tyr
GTA
[ENA]
¢þ
>WENV170618497
FUWD012971765
[FUWD] metagenome; unknown
334
417
+
Tyr
GTA
[ENA]
¢þ
>WENV170625028
FUWD013190389
[FUWD] metagenome; unknown
4209
4290
+
Tyr
GTA
[ENA]
¢þ
>WENV170633284
FUWD013393843
[FUWD] metagenome; unknown
4209
4290
+
Tyr
GTA
[ENA]
¢þ
>WENV170668035
LADL02000395
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
19008
19091
+
Tyr
GTA
[ENA]
¢þ
>WENV170705627
LNAP01000035
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
102180
102097
-
Tyr
GTA
[ENA]
¢þ
>WENV170705645
LNAP01000049
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2585
2666
+
Tyr
GTA
[ENA]
¢þ
>WENV170783427
MAAC01016802
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1652
1735
+
Tyr
GTA
[ENA]
¢þ
>WENV170783441
MAAC01016875
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
20859
20942
+
Tyr
GTA
[ENA]
¢þ
>W1910547436
FZNT01000004
Bacteroidota
Lutibacter agarilyticus DSM 29150 [FZNT]
380478
380397
-
Tyr
GTA
[ENA]
¡û
>W1910547446
FZNT01000007
Bacteroidota
Lutibacter agarilyticus DSM 29150 [FZNT]
227618
227699
+
Tyr
GTA
[ENA]
¡û
>W1910547601
FZNX01000003
Bacteroidota
Lutibacter flavus DSM 27993 [FZNX]
339046
338965
-
Tyr
GTA
[ENA]
¡û
>W1910547603
FZNX01000003
Bacteroidota
Lutibacter flavus DSM 27993 [FZNX]
176332
176251
-
Tyr
GTA
[ENA]
¡û
>W1910728211
MGWK01000029
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_35_11 [MGWK]
31826
31907
+
Tyr
GTA
[ENA]
¡û
>W1910728220
MGWK01000054
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_35_11 [MGWK]
56086
56005
-
Tyr
GTA
[ENA]
¡û
>W1810570267
QEIH01000004
Bacteroidota
Lutibacter citreus 1KV19 [QEIH]
90602
90521
-
Tyr
GTA
[ENA]
¡û
>W1810570285
QEIH01000008
Bacteroidota
Lutibacter citreus 1KV19 [QEIH]
135632
135713
+
Tyr
GTA
[ENA]
¡û
>C161055960
CP013355
Bacteroidota
Lutibacter profundi LP1 [CP013355]
2804668
2804751
+
Tyr
GTA
[Ensembl]
¡û
>C161055967
CP013355
Bacteroidota
Lutibacter profundi LP1 [CP013355]
1010182
1010099
-
Tyr
GTA
[Ensembl]
¡û
>W1610784595
LOEY01000032
Bacteroidota
Lutibacter sp. BRH_c52 [LOEY]
3027
3110
+
Tyr
GTA
[ENA]
¡û
>W1610784602
LOEY01000039
Bacteroidota
Lutibacter sp. BRH_c52 [LOEY]
5042
4959
-
Tyr
GTA
[ENA]
¡û
>W1710528626
FNNJ01000003
Bacteroidota
Lutibacter oricola [FNNJ]
295857
295938
+
Tyr
GTA
[ENA]
¡û
>W1710528647
FNNJ01000014
Bacteroidota
Lutibacter oricola [FNNJ]
16625
16542
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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