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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = TCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287594 (6 seq.)
>WENV181167043
OEIU01007135
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
75
1
-
Arg
TCG
[ENA]
¢þ
>ENV08000054
ABLU01091726
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
98
22
-
Arg
TCG
[ENA]
¡û
>WENV183661922
ORJL010149155
[ORJL] groundwater metagenome; groundwater
433
507
+
Arg
TCG
[ENA]
¢þ
>WENV183684767
ORMF010753215
[ORMF] groundwater metagenome; groundwater
2290
2364
+
Arg
TCG
[ENA]
¢þ
>WENV170007854
AMWB02161389
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1361
1287
-
Arg
TCG
[ENA]
¢þ
>WENV170559586
CXWL01131585
[CXWL] groundwater metagenome; biofilm material
1068
992
-
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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