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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = TCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299021 (6 seq.)
>W1710943631
LOPX01000004
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
165622
165546
-
Arg
TCT
[ENA]
¡û
>W1711029587
LRFH01000004
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
165622
165546
-
Arg
TCT
[ENA]
¡û
>ENV08000081
ABLU01177651
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
16
92
+
Arg
TCT
[ENA]
¡û
>W1911817762
QZMT01000001
Gammaproteobacteria
Guyparkeria sp. SCN-R1 [QZMT]
85153
85229
+
Arg
TCT
[ENA]
¡û
>W1610799931
LOPX01000004
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
165622
165546
-
Arg
TCT
[ENA]
¡û
>W1610877855
LRFH01000004
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
165622
165546
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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