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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = TGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32810 (5 seq.)
>WENV181404127
OGBZ01001471
[OGBZ] sediment metagenome; hot spring sediment
305
395
+
Ser
TGA
[ENA]
¢þ
>WENV181412519
OGCK01001186
[OGCK] hot springs metagenome; hot spring sediment
2933
2843
-
Ser
TGA
[ENA]
¢þ
>ENV08000031
ABLU01053340
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
116
26
-
Ser
TGA
[ENA]
¡û
>ENV08000036
ABLU01060905
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
97
7
-
Ser
TGA
[ENA]
¡û
>W1911817774
QZMT01000005
Gammaproteobacteria
Guyparkeria sp. SCN-R1 [QZMT]
103431
103341
-
Ser
TGA
[ENA]
¡û
Identical group No.36348 (1 seq.)
>ENV08000033
ABLU01055589
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
98
7
-
Ser
TGA
[ENA]
¡û
Identical group No.55535 (4 seq.)
>WENV181169324
OEIV010001400
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
213
126
-
Ser
TGA
[ENA]
¢þ
>ENV08000020
ABLU01034420
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
12
101
+
Ser
TGA
[ENA]
¡û
>WENV170553395
CXWK01016972
[CXWK] wastewater metagenome; activated sludge
12602
12691
+
Ser
TGA
[ENA]
¢þ
>WENV170559282
CXWL01117620
[CXWL] groundwater metagenome; biofilm material
799
886
+
Ser
TGA
[ENA]
¢þ
Identical group No.96137 (1 seq.)
>ENV08000004
ABLU01010543
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
119
32
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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