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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
Anticodon = TTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656062 (88 seq.)
>W1710791442
LJNT01000158
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA09 [LJNT]
5269
5195
-
Gln
TTG
[ENA]
¡û
>W1710797142
LJSU01000015
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
73591
73665
+
Gln
TTG
[ENA]
¡û
>W1711175836
LWFA01000773
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
497
571
+
Gln
TTG
[ENA]
¡û
>W1711175864
LWFA01002777
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
1307
1233
-
Gln
TTG
[ENA]
¡û
>W1711229678
LXYQ01000134
Alphaproteobacteria
Roseovarius indicus [LXYQ]
23298
23224
-
Gln
TTG
[ENA]
¡û
>W1711258974
LYUZ01000096
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
6943
6869
-
Gln
TTG
[ENA]
¡û
>W1711361434
MDLF01000018
Alphaproteobacteria
Rhodobacteraceae bacterium (ex Bugula neritina AB1) [MDLF]
118949
119023
+
Gln
TTG
[ENA]
¡û
>W131155854
AQOX01000003
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [AQOX]
19855
19781
-
Gln
TTG
[ENA]
¡û
>w012520
AAMO01000002
Alphaproteobacteria
Pseudooceanicola batsensis HTCC2597 [AAMO]
50866
50942
+
Gln
TTG
[ENA]
¡û
>WENV180103407
OAPA01031280
[OAPA] marine metagenome; ENVO:00002010
72
146
+
Gln
TTG
[ENA]
¢þ
>WENV180394385
OBPS01003109
[OBPS] marine metagenome; ENVO:00002010 seawater
189
115
-
Gln
TTG
[ENA]
¢þ
>WENV180395388
OBPT01014675
[OBPT] marine metagenome; ENVO:00002010 seawater
1030
1104
+
Gln
TTG
[ENA]
¢þ
>W141063319
APGJ01000004
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
20720
20646
-
Gln
TTG
[ENA]
¡û
>WENV181233791
OFET01000107
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
114289
114363
+
Gln
TTG
[ENA]
¢þ
>WENV181234469
OFEU01000187
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
64678
64752
+
Gln
TTG
[ENA]
¢þ
>WENV181234681
OFEU01001383
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
5962
6036
+
Gln
TTG
[ENA]
¢þ
>W141151559
AXBD01000002
Alphaproteobacteria
Leisingera daeponensis DSM 23529 [AXBD]
13720
13646
-
Gln
TTG
[ENA]
¡û
>W141151818
AXBI01000017
Alphaproteobacteria
Leisingera caerulea DSM 24564 [AXBI]
2188439
2188365
-
Gln
TTG
[ENA]
¡û
>WENV019182
AACY020527037
Marine microbial communities from Global Ocean Sampling (GOS)
2188
2112
-
Gln
TTG
[ENA]
>ENV08000034
ABLU01055718
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
40
114
+
Gln
TTG
[ENA]
¡û
>WENV183749810
PPFU01215726
[PPFU] hypolithon metagenome; Antarctic Hypolithon
220
294
+
Gln
TTG
[ENA]
¢þ
>WENV170468393
CEVF01029848
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
450
524
+
Gln
TTG
[ENA]
¢þ
>WENV170655181
JTFN01010533
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
27
101
+
Gln
TTG
[ENA]
¢þ
>WENV170655437
JTFN01031984
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
649
723
+
Gln
TTG
[ENA]
¢þ
>WENV170655495
JTFN01038399
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
762
688
-
Gln
TTG
[ENA]
¢þ
>WENV170655561
JTFN01046029
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
28
102
+
Gln
TTG
[ENA]
¢þ
>WENV170682555
LFIK01000314
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
35016
35090
+
Gln
TTG
[ENA]
¢þ
>WENV170682857
LFIK01001866
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
13822
13748
-
Gln
TTG
[ENA]
¢þ
>WENV170901227
MDTD01166967
[MDTD] marine metagenome; seawater
5625
5551
-
Gln
TTG
[ENA]
¢þ
>WENV170939316
MDTG01324032
[MDTG] marine metagenome; seawater
2320
2394
+
Gln
TTG
[ENA]
¢þ
>WENV170958707
MKWU01001750
[MKWU] sponge metagenome;
22603
22677
+
Gln
TTG
[ENA]
¢þ
>WENV170962824
MRWF01027957
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
99733
99659
-
Gln
TTG
[ENA]
¢þ
>WENV170963230
MRWG01000051
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
115790
115864
+
Gln
TTG
[ENA]
¢þ
>WENV170963946
MRWG01001490
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
9928
9854
-
Gln
TTG
[ENA]
¢þ
>C181158388
CP027665
Alphaproteobacteria
Pukyongiella litopenaei SH-1 [CP027665]
3210893
3210819
-
Gln
TTG
-
¡û
>W09111686
ABXF01000011
Alphaproteobacteria
Rhodobacterales bacterium Y4I [ABXF]
13880
13806
-
Gln
TTG
[ENA]
¡û
>W141818732
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
3997500
3997426
-
Gln
TTG
[ENA]
¡û
>W1910443127
FWFU01000003
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
640635
640709
+
Gln
TTG
[ENA]
¡û
>W1910443292
FWFY01000003
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
36937
36863
-
Gln
TTG
[ENA]
¡û
>W1910548992
FZOY01000002
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
428220
428294
+
Gln
TTG
[ENA]
¡û
>W1911189717
NQWH01000017
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
1574
1500
-
Gln
TTG
[ENA]
¡û
>W1911638556
PVWS01000060
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
4941
5015
+
Gln
TTG
[ENA]
¡û
>W1911696495
QMEJ01000001
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
1057727
1057801
+
Gln
TTG
[ENA]
¡û
>W1911696578
QMEK01000009
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
56355
56281
-
Gln
TTG
[ENA]
¡û
>W1911747135
QWDA01000001
Alphaproteobacteria
Paracoccaceae bacterium IMCC 34051 [QWDA]
311348
311274
-
Gln
TTG
[ENA]
¡û
>W1911813279
QZEX01000001
Alphaproteobacteria
Chachezhania antarctica SM1703 [QZEX]
716815
716741
-
Gln
TTG
[ENA]
¡û
>W1810061257
PDNI01000030
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
8933
9007
+
Gln
TTG
[ENA]
¡û
>W1810101673
PGTB01000199
Alphaproteobacteria
Pseudooceanicola lipolyticus 157 [PGTB]
5590
5516
-
Gln
TTG
[ENA]
¡û
>W1810356746
PVND01000004
Alphaproteobacteria
Meinhardsimonia xiamenensis DSM 24422 [PVND]
138314
138388
+
Gln
TTG
[ENA]
¡û
>W1810400377
PYGB01000002
Alphaproteobacteria
Limimaricola soesokkakensis DSM 29956 [PYGB]
36905
36831
-
Gln
TTG
[ENA]
¡û
>W1810584041
QEYE01000026
Alphaproteobacteria
Maritimibacter sp. 55A14 [QEYE]
42867
42941
+
Gln
TTG
[ENA]
¡û
>W1810692303
QLIW01000008
Alphaproteobacteria
Rhodobacteraceae bacterium AsT-22 [QLIW]
1353
1279
-
Gln
TTG
[ENA]
¡û
>W1810707326
QNGB01000011
Alphaproteobacteria
Roseovarius sp. TE539 [QNGB]
124542
124616
+
Gln
TTG
[ENA]
¡û
>W1810721888
QNTQ01000001
Alphaproteobacteria
Rhodosalinus halophilus E84 [QNTQ]
160360
160286
-
Gln
TTG
[ENA]
¡û
>W1810722634
QNVJ01000029
Alphaproteobacteria
Alkalilacustris brevis 34079 [QNVJ]
50001
50075
+
Gln
TTG
[ENA]
¡û
>W1810761152
QPLK01000011
Alphaproteobacteria
Rhodovulum sp. 12E13 [QPLK]
2343
2269
-
Gln
TTG
[ENA]
¡û
>WENV042324
AACY022229785
Marine microbial communities from Global Ocean Sampling (GOS)
225
151
-
Gln
TTG
[ENA]
>W1511482567
JWLC01000011
Alphaproteobacteria
Leisingera sp. ANG-M1 [JWLC]
142931
143005
+
Gln
TTG
[ENA]
¡û
>W1511482631
JWLD01000051
Alphaproteobacteria
Leisingera sp. ANG-Vp [JWLD]
938
864
-
Gln
TTG
[ENA]
¡û
>W1511482740
JWLF01000018
Alphaproteobacteria
Leisingera sp. ANG-S3 [JWLF]
129442
129516
+
Gln
TTG
[ENA]
¡û
>W1511482748
JWLG01000002
Alphaproteobacteria
Leisingera sp. ANG-M6 [JWLG]
127134
127060
-
Gln
TTG
[ENA]
¡û
>W1511482803
JWLH01000002
Alphaproteobacteria
Leisingera sp. ANG-S5 [JWLH]
170984
170910
-
Gln
TTG
[ENA]
¡û
>W1511482875
JWLI01000007
Alphaproteobacteria
Leisingera sp. ANG-M7 [JWLI]
107151
107225
+
Gln
TTG
[ENA]
¡û
>W1511483035
JWLM01000004
Alphaproteobacteria
Leisingera sp. ANG-S [JWLM]
69918
69992
+
Gln
TTG
[ENA]
¡û
>W11157644
AFCF01000066
Alphaproteobacteria
Leisingera sp. ANG1 ANG1 [AFCF]
129483
129557
+
Gln
TTG
[ENA]
¡û
>W1610093059
CYSR01000027
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
16476
16402
-
Gln
TTG
[ENA]
¡û
>W1610578280
LAXI01000002
Alphaproteobacteria
Roseovarius indicus [LAXI]
222972
223046
+
Gln
TTG
[ENA]
¡û
>W1610655367
LJNT01000158
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA09 [LJNT]
5269
5195
-
Gln
TTG
[ENA]
¡û
>W1610661099
LJSU01000015
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
73591
73665
+
Gln
TTG
[ENA]
¡û
>W1610984149
LWFA01000773
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
497
571
+
Gln
TTG
[ENA]
¡û
>W1610984177
LWFA01002777
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
1307
1233
-
Gln
TTG
[ENA]
¡û
>W1611013548
LXYQ01000134
Alphaproteobacteria
Roseovarius indicus [LXYQ]
23298
23224
-
Gln
TTG
[ENA]
¡û
>W1611021239
LYUZ01000096
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
6943
6869
-
Gln
TTG
[ENA]
¡û
>W1710015579
AQQU01000004
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
146341
146267
-
Gln
TTG
[ENA]
¡û
>W1710083054
BDIY01000009
Alphaproteobacteria
Roseovarius sp. A-2 [BDIY]
7833
7907
+
Gln
TTG
[ENA]
¡û
>W1710096267
CYSR01000027
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
16476
16402
-
Gln
TTG
[ENA]
¡û
>W1710514203
FNAT01000004
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
243223
243149
-
Gln
TTG
[ENA]
¡û
>W1710520704
FNFV01000004
Alphaproteobacteria
Meinhardsimonia xiamenensis xiamenense [FNFV]
242967
242893
-
Gln
TTG
[ENA]
¡û
>W1710539215
FNVD01000012
Alphaproteobacteria
Jhaorihella thermophila [FNVD]
85991
86065
+
Gln
TTG
[ENA]
¡û
>W1710541187
FNYD01000001
Alphaproteobacteria
Cribrihabitans marinus [FNYD]
487644
487718
+
Gln
TTG
[ENA]
¡û
>W1710545549
FOBO01000029
Alphaproteobacteria
Roseovarius tolerans [FOBO]
8028
8102
+
Gln
TTG
[ENA]
¡û
>W1710552359
FOGU01000004
Alphaproteobacteria
Tranquillimonas rosea roseus [FOGU]
390056
390130
+
Gln
TTG
[ENA]
¡û
>W1710557705
FOLG01000001
Alphaproteobacteria
Tropicimonas isoalkanivorans [FOLG]
426787
426861
+
Gln
TTG
[ENA]
¡û
>W1710559857
FOMY01000003
Alphaproteobacteria
Roseovarius indicus [FOMY]
356891
356817
-
Gln
TTG
[ENA]
¡û
>W1710572887
FOXA01000002
Alphaproteobacteria
Tranquillimonas alkanivorans [FOXA]
243333
243259
-
Gln
TTG
[ENA]
¡û
>W1710594769
FSRL01000001
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
2781063
2781137
+
Gln
TTG
[ENA]
¡û
>W1710609101
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
1023038
1022964
-
Gln
TTG
[ENA]
¡û
>W1710697153
LAXI01000002
Alphaproteobacteria
Roseovarius indicus [LAXI]
222972
223046
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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