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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
microbial fraction from reduced sediments of the Soudan Mine (Minnesota)
Anticodon = CTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.474813 (109 seq.)
>W1711095176
LTGO01000057
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
2693
2768
+
Glu
CTC
[ENA]
¡û
>W1711096629
LTHX01000081
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
72411
72336
-
Glu
CTC
[ENA]
¡û
>W1711102613
LTNW01000020
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
1884
1959
+
Glu
CTC
[ENA]
¡û
>W1711102614
LTNW01000020
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
4613
4688
+
Glu
CTC
[ENA]
¡û
>W1711103659
LTOW01000083
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
65614
65689
+
Glu
CTC
[ENA]
¡û
>W1711103660
LTOW01000084
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
598
673
+
Glu
CTC
[ENA]
¡û
>W1711105931
LTRH01000048
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
62127
62202
+
Glu
CTC
[ENA]
¡û
>W1711105932
LTRH01000049
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
615
690
+
Glu
CTC
[ENA]
¡û
>W1711106578
LTRY01000080
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
615
690
+
Glu
CTC
[ENA]
¡û
>W1711107208
LTSO01000049
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
77916
77841
-
Glu
CTC
[ENA]
¡û
>W1711107210
LTSO01000050
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
2157
2082
-
Glu
CTC
[ENA]
¡û
>W1711114760
LTZO01000074
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
27929
28004
+
Glu
CTC
[ENA]
¡û
>W1711114761
LTZO01000074
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
30666
30741
+
Glu
CTC
[ENA]
¡û
>W1711185885
LWNT01000068
Actinomycetota
Corynebacterium sp. HMSC08F01 [LWNT]
34787
34712
-
Glu
CTC
[ENA]
¡û
>W1711185938
LWNU01000044
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
66782
66707
-
Glu
CTC
[ENA]
¡û
>W1711185939
LWNU01000044
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
65327
65252
-
Glu
CTC
[ENA]
¡û
>W1711186551
LWOH01000058
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
39387
39312
-
Glu
CTC
[ENA]
¡û
>W1711186552
LWOH01000058
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
36657
36582
-
Glu
CTC
[ENA]
¡û
>W1711186785
LWOM01000072
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
84277
84202
-
Glu
CTC
[ENA]
¡û
>W1711186926
LWOP01000055
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
4309
4234
-
Glu
CTC
[ENA]
¡û
>W1711186927
LWOP01000055
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
259
184
-
Glu
CTC
[ENA]
¡û
>W1711186975
LWOR01000061
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
4059
3984
-
Glu
CTC
[ENA]
¡û
>W1711208401
LXGG01000012
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
84557
84482
-
Glu
CTC
[ENA]
¡û
>W1711510275
MLAL01000036
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
41121
41196
+
Glu
CTC
[ENA]
¡û
>W1711510276
MLAL01000036
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
42474
42549
+
Glu
CTC
[ENA]
¡û
>W1711511693
MLCQ01000018
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
102316
102391
+
Glu
CTC
[ENA]
¡û
>W1711511694
MLCQ01000018
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
103658
103733
+
Glu
CTC
[ENA]
¡û
>W1711511732
MLCR01000009
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
41668
41743
+
Glu
CTC
[ENA]
¡û
>W1711511767
MLCR01000029
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
65650
65575
-
Glu
CTC
[ENA]
¡û
>W1711517398
MLJM01000072
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
23968
23893
-
Glu
CTC
[ENA]
¡û
>C171064744
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
1274197
1274122
-
Glu
CTC
-
¡û
>C171064745
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
1272742
1272667
-
Glu
CTC
-
¡û
>W131159188
AQUV01000003
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
63149
63074
-
Glu
CTC
[ENA]
¡û
>W131159189
AQUV01000003
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
60184
60111
-
Glu
CTC
[ENA]
¡û
>W131164496
ARAV01000002
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
17145
17070
-
Glu
CTC
[ENA]
¡û
>W131164497
ARAV01000002
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
1429
1354
-
Glu
CTC
[ENA]
¡û
>W131215377
ATUY01000009
Actinomycetota
Actinotignum urinale DSM 15805 [ATUY]
10751
10826
+
Glu
CTC
[ENA]
¡û
>W131251667
CAVS020000034
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
6437
6512
+
Glu
CTC
[ENA]
¡û
>W141243572
CAJP01000041
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
144
71
-
Glu
CTC
[ENA]
¡û
>W141243574
CAJP01000042
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
1502
1427
-
Glu
CTC
[ENA]
¡û
>W141259167
CBYN010000040
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
12798
12873
+
Glu
CTC
[ENA]
¡û
>W141259168
CBYN010000040
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
15072
15147
+
Glu
CTC
[ENA]
¡û
>WENV182629220
OJKR01037437
[OJKR] metagenome; surface
600
527
-
Glu
CTC
[ENA]
¢þ
>WENV182635928
OJKZ01000025
[OJKZ] metagenome; surface
60638
60711
+
Glu
CTC
[ENA]
¢þ
>WENV182635929
OJKZ01000025
[OJKZ] metagenome; surface
63375
63448
+
Glu
CTC
[ENA]
¢þ
>WENV182635949
OJKZ01000037
[OJKZ] metagenome; surface
34421
34494
+
Glu
CTC
[ENA]
¢þ
>WENV182635950
OJKZ01000037
[OJKZ] metagenome; surface
35876
35949
+
Glu
CTC
[ENA]
¢þ
>WENV182640487
OJLB01018249
[OJLB] metagenome; surface
137
210
+
Glu
CTC
[ENA]
¢þ
>WENV182643009
OJLS01000083
[OJLS] metagenome; surface
865
938
+
Glu
CTC
[ENA]
¢þ
>WENV182643010
OJLS01000083
[OJLS] metagenome; surface
1912
1985
+
Glu
CTC
[ENA]
¢þ
>WENV182643520
OJLW01000008
[OJLW] metagenome; surface
32044
32117
+
Glu
CTC
[ENA]
¢þ
>WENV182643521
OJLW01000008
[OJLW] metagenome; surface
34781
34854
+
Glu
CTC
[ENA]
¢þ
>WENV182643943
OJLW01003660
[OJLW] metagenome; surface
1434
1507
+
Glu
CTC
[ENA]
¢þ
>WENV182644628
OJLY01000082
[OJLY] metagenome; surface
13495
13422
-
Glu
CTC
[ENA]
¢þ
>WENV182644629
OJLY01000082
[OJLY] metagenome; surface
10758
10685
-
Glu
CTC
[ENA]
¢þ
>WENV182644655
OJLY01000123
[OJLY] metagenome; surface
27502
27429
-
Glu
CTC
[ENA]
¢þ
>WENV182644656
OJLY01000123
[OJLY] metagenome; surface
26047
25974
-
Glu
CTC
[ENA]
¢þ
>WENV182645791
OJLZ01002976
[OJLZ] metagenome; surface
2918
2845
-
Glu
CTC
[ENA]
¢þ
>WENV182645975
OJLZ01016615
[OJLZ] metagenome; surface
621
548
-
Glu
CTC
[ENA]
¢þ
>WENV182671635
OJNM01000716
[OJNM] metagenome; surface
7857
7784
-
Glu
CTC
[ENA]
¢þ
>WENV182671636
OJNM01000716
[OJNM] metagenome; surface
6402
6329
-
Glu
CTC
[ENA]
¢þ
>WENV182671751
OJNM01001937
[OJNM] metagenome; surface
2773
2700
-
Glu
CTC
[ENA]
¢þ
>ENV08000095
ABLV01004126
microbial fraction from reduced sediments of the Soudan Mine (Minnesota)
13
88
+
Glu
CTC
[ENA]
¡û
>C181039024
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
1152954
1153027
+
Glu
CTC
-
¡û
>C181039025
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
1159644
1159717
+
Glu
CTC
-
¡û
>C181143877
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
1006740
1006813
+
Glu
CTC
-
¡û
>C181143878
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
1008592
1008665
+
Glu
CTC
-
¡û
>C191111898
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
1068035
1068108
+
Glu
CTC
-
¡û
>W09124035
ACHJ01000026
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
41945
42018
+
Glu
CTC
[ENA]
¡û
>W09127952
ACLJ01000016
Actinomycetota
Corynebacterium genitalium ATCC 33030 [ACLJ]
136
63
-
Glu
CTC
[ENA]
¡û
>W1910225866
FMSX01000021
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
233708
233781
+
Glu
CTC
[ENA]
¡û
>W1910225867
FMSX01000021
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
235163
235236
+
Glu
CTC
[ENA]
¡û
>W1910339897
FTLL01000013
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
118657
118730
+
Glu
CTC
[ENA]
¡û
>W1910339898
FTLL01000013
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
120564
120637
+
Glu
CTC
[ENA]
¡û
>W1910469812
FWYQ01000001
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
6328
6255
-
Glu
CTC
[ENA]
¡û
>W1910469813
FWYQ01000001
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
862
789
-
Glu
CTC
[ENA]
¡û
>W1911551186
OVSI01000001
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
379099
379026
-
Glu
CTC
[ENA]
¡û
>W1911596541
PNHG01000002
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
213370
213297
-
Glu
CTC
[ENA]
¡û
>W1911596542
PNHG01000002
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
213142
213069
-
Glu
CTC
[ENA]
¡û
>W1911597408
PNHX01000007
Actinomycetota
Actinotignum urinale UMB0759 [PNHX]
423
350
-
Glu
CTC
[ENA]
¡û
>W1810118394
PHQP01000042
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
2559
2632
+
Glu
CTC
[ENA]
¡û
>W1810118395
PHQP01000042
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
3313
3386
+
Glu
CTC
[ENA]
¡û
>W1810187371
PKHN01000008
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
73198
73125
-
Glu
CTC
[ENA]
¡û
>W1810187372
PKHN01000008
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
69148
69075
-
Glu
CTC
[ENA]
¡û
>W1810187461
PKHP01000007
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
49195
49268
+
Glu
CTC
[ENA]
¡û
>W1810187462
PKHP01000007
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
51932
52005
+
Glu
CTC
[ENA]
¡û
>W1810187491
PKHQ01000001
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
83413
83340
-
Glu
CTC
[ENA]
¡û
>W1810187492
PKHQ01000001
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
80667
80594
-
Glu
CTC
[ENA]
¡û
>W1810568903
QEEY01000008
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
27406
27479
+
Glu
CTC
[ENA]
¡û
>W1810568904
QEEY01000008
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
29258
29331
+
Glu
CTC
[ENA]
¡û
>W1810623571
QHCV01000016
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
23306
23233
-
Glu
CTC
[ENA]
¡û
>W1810623572
QHCV01000016
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
22552
22479
-
Glu
CTC
[ENA]
¡û
>C151045584
CP009215
Actinomycetota
Corynebacterium ureicelerivorans IMMIB RIV-2301 [CP009215]
1043536
1043611
+
Glu
CTC
[Ensembl]
¡û
>C151045585
CP009215
Actinomycetota
Corynebacterium ureicelerivorans IMMIB RIV-2301 [CP009215]
1047561
1047636
+
Glu
CTC
[Ensembl]
¡û
>C151084335
CP011541
Actinomycetota
Corynebacterium epidermidicanis DSM 45586 [CP011541]
1131145
1131218
+
Glu
CTC
[Ensembl]
¡û
>C151084336
CP011541
Actinomycetota
Corynebacterium epidermidicanis DSM 45586 [CP011541]
1136513
1136588
+
Glu
CTC
[Ensembl]
¡û
>W1511351448
JRNG01000028
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
24379
24304
-
Glu
CTC
[ENA]
¡û
>W1511351449
JRNG01000028
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
24063
23988
-
Glu
CTC
[ENA]
¡û
>C161041068
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
882388
882313
-
Glu
CTC
[Ensembl]
¡û
>C161041069
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
878338
878263
-
Glu
CTC
[Ensembl]
¡û
>W1610436829
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
93897
93822
-
Glu
CTC
[ENA]
¡û
>W1610436830
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
89827
89752
-
Glu
CTC
[ENA]
¡û
>W1610996163
LXGG01000012
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
84557
84482
-
Glu
CTC
[ENA]
¡û
>W1710436565
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
93897
93822
-
Glu
CTC
[ENA]
¡û
>W1710436566
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
89827
89752
-
Glu
CTC
[ENA]
¡û
>W1710534336
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
2209112
2209187
+
Glu
CTC
[ENA]
¡û
>W1710534337
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
2211849
2211924
+
Glu
CTC
[ENA]
¡û
>W1710595977
FTMH01000007
Actinomycetota
Corynebacterium afermentans [FTMH]
29435
29360
-
Glu
CTC
[ENA]
¡û
>W1710598771
FTOF01000002
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
105959
106034
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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