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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
stramenopiles
Anticodon = CCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460409 (43 seq.)
>WENV180108801
OAPI01000305
[OAPI] marine metagenome; ENVO.00002150
294
222
-
Arg
CCG
[ENA]
¢þ
>WENV180109337
OAPJ01084294
[OAPJ] marine metagenome; ENVO 00002150
21
95
+
Arg
CCG
[ENA]
¢þ
>WENV180208845
OBAJ01061107
[OBAJ] marine metagenome; Coastal water
296
370
+
Arg
CCG
[ENA]
¢þ
>WENV180209039
OBAK01008621
[OBAK] marine metagenome; ENVO.00002150
135
63
-
Arg
CCG
[ENA]
¢þ
>WENV180360250
OBNT01031062
[OBNT] marine metagenome; Sea Water
215
143
-
Arg
CCG
[ENA]
¢þ
>WENV180362844
OBNX01051979
[OBNX] marine metagenome; ENVO:00002010
379
307
-
Arg
CCG
[ENA]
¢þ
>WENV180363188
OBNY01005422
[OBNY] marine metagenome; ENVO:00002010
531
459
-
Arg
CCG
[ENA]
¢þ
>WENV180364234
OBNZ01161958
[OBNZ] marine metagenome; ENVO:00002010
184
112
-
Arg
CCG
[ENA]
¢þ
>WENV180364968
OBOB01000890
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
154
226
+
Arg
CCG
[ENA]
¢þ
>WENV180365736
OBOC01023090
[OBOC] marine metagenome; ocean water
174
102
-
Arg
CCG
[ENA]
¢þ
>WENV180366994
OBOE01002763
[OBOE] marine metagenome; ENVO:00002010
625
553
-
Arg
CCG
[ENA]
¢þ
>WENV180368647
OBOF01174733
[OBOF] marine metagenome; ENVO:00002010
208
280
+
Arg
CCG
[ENA]
¢þ
>WENV180368793
OBOG01000671
[OBOG] marine metagenome; seawater
1390
1462
+
Arg
CCG
[ENA]
¢þ
>WENV180375944
OBOL01140337
[OBOL] marine metagenome; Surface water
106
34
-
Arg
CCG
[ENA]
¢þ
>WENV180376592
OBOM01034779
[OBOM] marine metagenome; Seawater
409
481
+
Arg
CCG
[ENA]
¢þ
>WENV180383403
OBOU01069550
[OBOU] marine metagenome; ENV:00002010
165
93
-
Arg
CCG
[ENA]
¢þ
>WENV180393108
OBPP01076723
[OBPP] marine metagenome; ENVO:00002042
356
284
-
Arg
CCG
[ENA]
¢þ
>WENV180394499
OBPS01011040
[OBPS] marine metagenome; ENVO:00002010 seawater
544
472
-
Arg
CCG
[ENA]
¢þ
>WENV180395718
OBPT01094356
[OBPT] marine metagenome; ENVO:00002010 seawater
18
90
+
Arg
CCG
[ENA]
¢þ
>WENV180591202
OCOV01003503
[OCOV] marine metagenome; ENVO:01000301
526
454
-
Arg
CCG
[ENA]
¢þ
>WENV180593981
OCOY01007918
[OCOY] marine metagenome; ENVO:00002010
212
140
-
Arg
CCG
[ENA]
¢þ
>WENV181092485
OEBK01003090
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
778
706
-
Arg
CCG
[ENA]
¢þ
>WENV181367126
OFPU01000446
[OFPU] freshwater metagenome; Freshwater Lake
140
68
-
Arg
CCG
[ENA]
¢þ
>WENV183055562
OLHD01002153
[OLHD] seawater metagenome; Sea water
133
61
-
Arg
CCG
[ENA]
¢þ
>WENV170306059
CESI01306999
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1138
1210
+
Arg
CCG
[ENA]
¢þ
>WENV170325982
CEST01081006
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2260
2188
-
Arg
CCG
[ENA]
¢þ
>WENV170533938
CEWO01177015
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
338
266
-
Arg
CCG
[ENA]
¢þ
>WENV170623158
FUWD013139066
[FUWD] metagenome; unknown
583
511
-
Arg
CCG
[ENA]
¢þ
>WENV170631396
FUWD013350693
[FUWD] metagenome; unknown
4825
4753
-
Arg
CCG
[ENA]
¢þ
>WENV170647133
JQIA01012651
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
3591
3663
+
Arg
CCG
[ENA]
¢þ
>WENV170810583
MDSW01151423
[MDSW] marine metagenome; seawater
7638
7710
+
Arg
CCG
[ENA]
¢þ
>WENV170827498
MDSY01130366
[MDSY] marine metagenome; seawater
3415
3343
-
Arg
CCG
[ENA]
¢þ
>CHL1810013635
KJ958479
Stramenopiles
Chaetoceros simplex (KJ958479)
27025
26951
-
Arg
CCG
[ENA]
¡û
>CHL1810013696
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
6364
6292
-
Arg
CCG
[ENA]
¡û
>CHL1810013751
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
6403
6331
-
Arg
CCG
[ENA]
¡û
>CHL1810059271
MG755793
Stramenopiles
Rhizosolenia setigera (MG755793)
23912
23984
+
Arg
CCG
[ENA]
¡û
>CHL1810059321
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
25148
25076
-
Arg
CCG
[ENA]
¡û
>CHL1810059346
MG755796
Stramenopiles
Guinardia striata (MG755796)
37571
37499
-
Arg
CCG
[ENA]
¡û
>CHL1810059381
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
23716
23788
+
Arg
CCG
[ENA]
¡û
>CHL1810059456
MG755801
Stramenopiles
Triceratium dubium (MG755801)
24073
24001
-
Arg
CCG
[ENA]
¡û
>CHL1810059543
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
6340
6268
-
Arg
CCG
[ENA]
¡û
>CHL090102773
EF067921
stramenopiles
Thalassiosira pseudonana
6547
6475
-
Arg
CCG
[ENA]
¡û
>CHL090103364
Z67753
stramenopiles
Odontella sinensis
95722
95794
+
Arg
CCG
[ENA]
¡û
Identical group No.588599 (2 seq.)
>WENV180375147
OBOK01137092
[OBOK] marine metagenome; seawater
327
255
-
Arg
CCG
[ENA]
¢þ
>CHL090102725
EF067920
stramenopiles
Phaeodactylum tricornutum
30013
30085
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK