This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
stramenopiles
Anticodon = GCA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.783352 (62 seq.)
>WENV180081514
MPMC02123220
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
1050
1120
+
Cys
GCA
[ENA]
¢þ
>WENV180108911
OAPI01024259
[OAPI] marine metagenome; ENVO.00002150
255
325
+
Cys
GCA
[ENA]
¢þ
>WENV180110435
OAPM01055596
[OAPM] marine metagenome; ENVO.00002110
307
379
+
Cys
GCA
[ENA]
¢þ
>WENV180113856
OAPR01038592
[OAPR] marine metagenome; seawater
423
495
+
Cys
GCA
[ENA]
¢þ
>WENV180209302
OBAK01062989
[OBAK] marine metagenome; ENVO.00002150
263
193
-
Cys
GCA
[ENA]
¢þ
>WENV180212314
OBAN01005780
[OBAN] marine metagenome; ENVO 00002150
532
602
+
Cys
GCA
[ENA]
¢þ
>WENV180365017
OBOB01003095
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
280
210
-
Cys
GCA
[ENA]
¢þ
>WENV180368774
OBOG01000273
[OBOG] marine metagenome; seawater
270
200
-
Cys
GCA
[ENA]
¢þ
>WENV180374636
OBOK01003531
[OBOK] marine metagenome; seawater
103
173
+
Cys
GCA
[ENA]
¢þ
>WENV180383731
OBOV01012773
[OBOV] marine metagenome; ENV:00002010
326
256
-
Cys
GCA
[ENA]
¢þ
>WENV180391795
OBPN01048832
[OBPN] marine metagenome; seawater
182
252
+
Cys
GCA
[ENA]
¢þ
>WENV180591449
OCOV01022836
[OCOV] marine metagenome; ENVO:01000301
470
400
-
Cys
GCA
[ENA]
¢þ
>WENV180594175
OCOY01079448
[OCOY] marine metagenome; ENVO:00002010
8
78
+
Cys
GCA
[ENA]
¢þ
>WENV180650345
OCSY01010897
[OCSY] marine metagenome; 30 L Plastic container
554
484
-
Cys
GCA
[ENA]
¢þ
>WENV180650607
OCSY01094128
[OCSY] marine metagenome; 30 L Plastic container
171
98
-
Cys
GCA
[ENA]
¢þ
>WENV181162613
OEIO01002399
[OEIO] marine metagenome; sea ice
438
368
-
Cys
GCA
[ENA]
¢þ
>WENV181320971
OFKJ01004533
[OFKJ] marine metagenome; sea ice
548
478
-
Cys
GCA
[ENA]
¢þ
>WENV181322437
OFKR01008028
[OFKR] marine metagenome; sea ice
504
434
-
Cys
GCA
[ENA]
¢þ
>WENV181322708
OFKU01000069
[OFKU] marine metagenome; sea ice
2329
2259
-
Cys
GCA
[ENA]
¢þ
>WENV181322833
OFKV01000362
[OFKV] marine metagenome; sea ice
1239
1169
-
Cys
GCA
[ENA]
¢þ
>WENV181324679
OFLG01003854
[OFLG] seawater metagenome; seawater
248
318
+
Cys
GCA
[ENA]
¢þ
>WENV183055646
OLHD01011204
[OLHD] seawater metagenome; Sea water
446
519
+
Cys
GCA
[ENA]
¢þ
>WENV183615451
OOEB01019182
[OOEB] marine metagenome; sea ice
301
231
-
Cys
GCA
[ENA]
¢þ
>WENV183615883
OOEC01000474
[OOEC] marine metagenome; sea ice
638
708
+
Cys
GCA
[ENA]
¢þ
>WENV183616756
OOEE01000296
[OOEE] marine metagenome; sea ice
4026
4096
+
Cys
GCA
[ENA]
¢þ
>WENV183617463
OOEG01000504
[OOEG] marine metagenome; sea ice
235
305
+
Cys
GCA
[ENA]
¢þ
>WENV183620961
OOFT01000664
[OOFT] marine metagenome; sea ice
3302
3232
-
Cys
GCA
[ENA]
¢þ
>WENV183621178
OOFT01014471
[OOFT] marine metagenome; sea ice
906
836
-
Cys
GCA
[ENA]
¢þ
>WENV183622753
OOFW01005566
[OOFW] marine metagenome; sea ice
1283
1353
+
Cys
GCA
[ENA]
¢þ
>WENV183622964
OOFX01000061
[OOFX] marine metagenome; sea ice
3422
3492
+
Cys
GCA
[ENA]
¢þ
>WENV183623573
OOGA01012522
[OOGA] marine metagenome; sea ice
377
447
+
Cys
GCA
[ENA]
¢þ
>WENV183624224
OOGC01003896
[OOGC] marine metagenome; seawater
248
318
+
Cys
GCA
[ENA]
¢þ
>WENV183624373
OOGD01003963
[OOGD] marine metagenome; sea ice
733
803
+
Cys
GCA
[ENA]
¢þ
>WENV183624895
OOGE01029866
[OOGE] marine metagenome; sea ice
323
253
-
Cys
GCA
[ENA]
¢þ
>WENV183624904
OOGE01032229
[OOGE] marine metagenome; sea ice
477
547
+
Cys
GCA
[ENA]
¢þ
>WENV183625669
OOGG01007102
[OOGG] marine metagenome; sea ice
768
698
-
Cys
GCA
[ENA]
¢þ
>WENV183627990
OOGM01000325
[OOGM] marine metagenome; sea ice
2615
2685
+
Cys
GCA
[ENA]
¢þ
>WENV183628233
OOGN01000351
[OOGN] marine metagenome; sea ice
170
100
-
Cys
GCA
[ENA]
¢þ
>WENV183628523
OOGO01000556
[OOGO] marine metagenome; sea ice
2217
2287
+
Cys
GCA
[ENA]
¢þ
>WENV183630725
OOGU01001039
[OOGU] marine metagenome; sea ice
1678
1608
-
Cys
GCA
[ENA]
¢þ
>WENV170440972
CEUV01141085
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
430
358
-
Cys
GCA
[ENA]
¢þ
>WENV170531901
CEWO01004894
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8415
8485
+
Cys
GCA
[ENA]
¢þ
>WENV170569671
FLMP01267083
[FLMP] seawater metagenome; seawater
3
73
+
Cys
GCA
[ENA]
¢þ
>WENV170604382
FUWD010391868
[FUWD] metagenome; unknown
107
177
+
Cys
GCA
[ENA]
¢þ
>WENV170639228
JFJP01001702
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
24921
24851
-
Cys
GCA
[ENA]
¢þ
>WENV170639260
JFJP01001713
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1969
1899
-
Cys
GCA
[ENA]
¢þ
>WENV170807203
MDSW01094513
[MDSW] marine metagenome; seawater
221
151
-
Cys
GCA
[ENA]
¢þ
>WENV170819129
MDSX01086166
[MDSX] marine metagenome; seawater
10080
10150
+
Cys
GCA
[ENA]
¢þ
>WENV170896922
MDTD01103014
[MDTD] marine metagenome; seawater
13223
13295
+
Cys
GCA
[ENA]
¢þ
>CHL1810002580
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
121509
121579
+
Cys
GCA
[ENA]
¡û
>CHL1810002586
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
90580
90510
-
Cys
GCA
[ENA]
¡û
>CHL1810002664
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
100602
100672
+
Cys
GCA
[ENA]
¡û
>CHL1810008311
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
103990
103919
-
Cys
GCA
[ENA]
¡û
>CHL1810008359
KC509523
Stramenopiles
Didymosphenia geminata BCC011 (KC509523)
76402
76472
+
Cys
GCA
[ENA]
¡û
>CHL1810008391
KC509524
Stramenopiles
Leptocylindrus danicus ccmp1856 (KC509524)
100465
100392
-
Cys
GCA
[ENA]
¡û
>CHL1810013628
KJ958479
Stramenopiles
Chaetoceros simplex (KJ958479)
94239
94169
-
Cys
GCA
[ENA]
¡û
>CHL1810013711
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
106975
106902
-
Cys
GCA
[ENA]
¡û
>CHL1810019274
KR709240
Stramenopiles
Pseudo-nitzschia multiseries (KR709240)
19843
19915
+
Cys
GCA
[ENA]
¡û
>CHL1810059257
MG755792
Stramenopiles
Plagiogramma staurophorum (MG755792)
160247
160177
-
Cys
GCA
[ENA]
¡û
>CHL1810059280
MG755793
Stramenopiles
Rhizosolenia setigera (MG755793)
76152
76223
+
Cys
GCA
[ENA]
¡û
>CHL1810059333
MG755796
Stramenopiles
Guinardia striata (MG755796)
77074
77144
+
Cys
GCA
[ENA]
¡û
>CHL090102766
EF067921
stramenopiles
Thalassiosira pseudonana
105977
105907
-
Cys
GCA
[ENA]
¡û
Identical group No.793276 (13 seq.)
>WENV180363498
OBNY01077708
[OBNY] marine metagenome; ENVO:00002010
137
67
-
Cys
GCA
[ENA]
¢þ
>WENV180365905
OBOC01064170
[OBOC] marine metagenome; ocean water
72
2
-
Cys
GCA
[ENA]
¢þ
>WENV181367137
OFPU01001301
[OFPU] freshwater metagenome; Freshwater Lake
203
273
+
Cys
GCA
[ENA]
¢þ
>WENV181395852
OFSB01010310
[OFSB] freshwater metagenome; Freshwater Lake
236
165
-
Cys
GCA
[ENA]
¢þ
>WENV182565544
OJEH01011782
[OJEH] seawater metagenome; Sea water
25
95
+
Cys
GCA
[ENA]
¢þ
>WENV170534048
CEWO01184260
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1681
1611
-
Cys
GCA
[ENA]
¢þ
>WENV170639230
JFJP01001703
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5858
5928
+
Cys
GCA
[ENA]
¢þ
>WENV170809198
MDSW01127939
[MDSW] marine metagenome; seawater
1716
1646
-
Cys
GCA
[ENA]
¢þ
>CHL1810008419
KC509525
Stramenopiles
Lithodesmium undulatum ccmp1797 (KC509525)
95216
95146
-
Cys
GCA
[ENA]
¡û
>CHL1810013689
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
104506
104436
-
Cys
GCA
[ENA]
¡û
>CHL1810059312
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
121424
121354
-
Cys
GCA
[ENA]
¡û
>CHL1810059536
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
105894
105824
-
Cys
GCA
[ENA]
¡û
>CHL090103354
Z67753
stramenopiles
Odontella sinensis
13780
13850
+
Cys
GCA
[ENA]
¡û
Identical group No.833994 (1 seq.)
>CHL090102735
EF067920
stramenopiles
Phaeodactylum tricornutum
104713
104643
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK