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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
stramenopiles
Anticodon = GCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26055 (1 seq.)
>CHL090103370
Z67753
stramenopiles
Odontella sinensis
65340
65252
-
Ser
GCT
[ENA]
¡û
Identical group No.47795 (2 seq.)
>WENV180594080
OCOY01028669
[OCOY] marine metagenome; ENVO:00002010
256
168
-
Ser
GCT
[ENA]
¢þ
>CHL090102752
EF067921
stramenopiles
Thalassiosira pseudonana
49735
49823
+
Ser
GCT
[ENA]
¡û
Identical group No.52386 (16 seq.)
>WENV181415510
OGCL01012784
[OGCL] hot springs metagenome; Hot spring water
668
756
+
Ser
GCT
[ENA]
¢þ
>WENV183060469
OLHX01018362
[OLHX] seawater metagenome; Sea water
494
406
-
Ser
GCT
[ENA]
¢þ
>WENV183620749
OOFS01027759
[OOFS] marine metagenome; sea ice
467
379
-
Ser
GCT
[ENA]
¢þ
>WENV183621850
OOFV01000106
[OOFV] marine metagenome; seawater
3252
3340
+
Ser
GCT
[ENA]
¢þ
>WENV170017327
BART01015174
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
845
757
-
Ser
GCT
[ENA]
¢þ
>WENV170601394
FUWD010170936
[FUWD] metagenome; unknown
609
521
-
Ser
GCT
[ENA]
¢þ
>WENV170603766
FUWD010333457
[FUWD] metagenome; unknown
112
200
+
Ser
GCT
[ENA]
¢þ
>WENV170639243
JFJP01001704
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3462
3374
-
Ser
GCT
[ENA]
¢þ
>WENV170785779
MDSP01370928
[MDSP] gut metagenome; Stomach gut content
456
370
-
Ser
GCT
[ENA]
¢þ
>WENV170817007
MDSX01041960
[MDSX] marine metagenome; seawater
4682
4770
+
Ser
GCT
[ENA]
¢þ
>CHL1810013675
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
49227
49314
+
Ser
GCT
[ENA]
¡û
>CHL1810013723
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
5261
5173
-
Ser
GCT
[ENA]
¡û
>CHL1810013730
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
49181
49270
+
Ser
GCT
[ENA]
¡û
>CHL1810059385
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
43922
44008
+
Ser
GCT
[ENA]
¡û
>CHL1810059631
MG755808
Stramenopiles
Acanthoceras zachariasii (MG755808)
57369
57457
+
Ser
GCT
[ENA]
¡û
>CHL090102723
EF067920
stramenopiles
Phaeodactylum tricornutum
17793
17881
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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