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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
stramenopiles
Anticodon = GTA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183539 (5 seq.)
>WENV181322050
OFKP01001608
[OFKP] marine metagenome; sea ice
866
785
-
Tyr
GTA
[ENA]
¢þ
>WENV181323762
OFKZ01003331
[OFKZ] marine metagenome; sea ice
377
296
-
Tyr
GTA
[ENA]
¢þ
>WENV183615430
OOEB01016636
[OOEB] marine metagenome; sea ice
297
378
+
Tyr
GTA
[ENA]
¢þ
>WENV183620945
OOFT01000304
[OOFT] marine metagenome; sea ice
2106
2025
-
Tyr
GTA
[ENA]
¢þ
>CHL090102722
EF067920
stramenopiles
Phaeodactylum tricornutum
17190
17273
+
Tyr
GTA
[ENA]
¡û
Identical group No.193318 (6 seq.)
>WENV180366127
OBOC01145112
[OBOC] marine metagenome; ocean water
312
231
-
Tyr
GTA
[ENA]
¢þ
>WENV180650342
OCSY01010763
[OCSY] marine metagenome; 30 L Plastic container
150
69
-
Tyr
GTA
[ENA]
¢þ
>WENV170533547
CEWO01139771
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
177
258
+
Tyr
GTA
[ENA]
¢þ
>CHL1810059318
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
63820
63739
-
Tyr
GTA
[ENA]
¡û
>CHL1810059434
MG755801
Stramenopiles
Triceratium dubium (MG755801)
53634
53715
+
Tyr
GTA
[ENA]
¡û
>CHL090103369
Z67753
stramenopiles
Odontella sinensis
66431
66350
-
Tyr
GTA
[ENA]
¡û
Identical group No.196757 (2 seq.)
>CHL1810059353
MG755798
Stramenopiles
Attheya longicornis (MG755798)
21417
21498
+
Tyr
GTA
[ENA]
¡û
>CHL090102754
EF067921
stramenopiles
Thalassiosira pseudonana
50570
50653
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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