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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
stramenopiles
Anticodon = GTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.468149 (2 seq.)
>WENV180593859
OCOY01000844
[OCOY] marine metagenome; ENVO:00002010
745
818
+
His
GTG
[ENA]
¢þ
>CHL090102769
EF067921
stramenopiles
Thalassiosira pseudonana
84653
84580
-
His
GTG
[ENA]
¡û
Identical group No.480835 (5 seq.)
>WENV180108962
OAPI01044534
[OAPI] marine metagenome; ENVO.00002150
359
286
-
His
GTG
[ENA]
¢þ
>WENV183615594
OOEB01051757
[OOEB] marine metagenome; sea ice
358
285
-
His
GTG
[ENA]
¢þ
>WENV183620627
OOFS01006633
[OOFS] marine metagenome; sea ice
68
141
+
His
GTG
[ENA]
¢þ
>CHL1810019296
KR709240
Stramenopiles
Pseudo-nitzschia multiseries (KR709240)
16015
15942
-
His
GTG
[ENA]
¡û
>CHL090102739
EF067920
stramenopiles
Phaeodactylum tricornutum
81251
81178
-
His
GTG
[ENA]
¡û
Identical group No.492985 (10 seq.)
>WENV180109123
OAPJ01010131
[OAPJ] marine metagenome; ENVO 00002150
618
545
-
His
GTG
[ENA]
¢þ
>WENV180209759
OBAL01018746
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
593
520
-
His
GTG
[ENA]
¢þ
>WENV180368662
OBOF01189000
[OBOF] marine metagenome; ENVO:00002010
294
221
-
His
GTG
[ENA]
¢þ
>WENV180369655
OBOG01223897
[OBOG] marine metagenome; seawater
189
116
-
His
GTG
[ENA]
¢þ
>WENV180370478
OBOH01107578
[OBOH] marine metagenome; ENVO:00002010
239
166
-
His
GTG
[ENA]
¢þ
>WENV180395823
OBPT01160846
[OBPT] marine metagenome; ENVO:00002010 seawater
293
220
-
His
GTG
[ENA]
¢þ
>CHL1810013631
KJ958479
Stramenopiles
Chaetoceros simplex (KJ958479)
71199
71126
-
His
GTG
[ENA]
¡û
>CHL1810013714
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
83282
83209
-
His
GTG
[ENA]
¡û
>CHL1810059641
MG755808
Stramenopiles
Acanthoceras zachariasii (MG755808)
109901
109974
+
His
GTG
[ENA]
¡û
>CHL090103357
Z67753
stramenopiles
Odontella sinensis
35295
35368
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK