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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
stramenopiles
Anticodon = TAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57145 (20 seq.)
>WENV180209303
OBAK01062989
[OBAK] marine metagenome; ENVO.00002150
125
39
-
Leu
TAA
[ENA]
¢þ
>WENV180357308
OBNN01001302
[OBNN] marine metagenome; Coastal water
21
107
+
Leu
TAA
[ENA]
¢þ
>WENV180365018
OBOB01003095
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
141
55
-
Leu
TAA
[ENA]
¢þ
>WENV180366941
OBOE01000435
[OBOE] marine metagenome; ENVO:00002010
429
343
-
Leu
TAA
[ENA]
¢þ
>WENV180374637
OBOK01003531
[OBOK] marine metagenome; seawater
241
329
+
Leu
TAA
[ENA]
¢þ
>WENV180591450
OCOV01022836
[OCOV] marine metagenome; ENVO:01000301
332
246
-
Leu
TAA
[ENA]
¢þ
>WENV180650346
OCSY01010897
[OCSY] marine metagenome; 30 L Plastic container
415
329
-
Leu
TAA
[ENA]
¢þ
>WENV181367138
OFPU01001301
[OFPU] freshwater metagenome; Freshwater Lake
341
427
+
Leu
TAA
[ENA]
¢þ
>WENV170634367
FYBJ01000489
[FYBJ] marine metagenome; marine
2963
3051
+
Leu
TAA
[ENA]
¢þ
>WENV170808682
MDSW01119267
[MDSW] marine metagenome; seawater
28
116
+
Leu
TAA
[ENA]
¢þ
>CHL1810002581
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
121647
121735
+
Leu
TAA
[ENA]
¡û
>CHL1810002587
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
90442
90354
-
Leu
TAA
[ENA]
¡û
>CHL1810008312
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
103854
103768
-
Leu
TAA
[ENA]
¡û
>CHL1810013712
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
106837
106751
-
Leu
TAA
[ENA]
¡û
>CHL1810013745
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
104805
104719
-
Leu
TAA
[ENA]
¡û
>CHL1810059281
MG755793
Stramenopiles
Rhizosolenia setigera (MG755793)
76295
76383
+
Leu
TAA
[ENA]
¡û
>CHL1810059334
MG755796
Stramenopiles
Guinardia striata (MG755796)
77208
77294
+
Leu
TAA
[ENA]
¡û
>CHL1810059395
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
102449
102363
-
Leu
TAA
[ENA]
¡û
>CHL1810059537
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
105756
105670
-
Leu
TAA
[ENA]
¡û
>CHL090102767
EF067921
stramenopiles
Thalassiosira pseudonana
105831
105745
-
Leu
TAA
[ENA]
¡û
Identical group No.75289 (14 seq.)
>WENV180015250
FQKF010457752
[FQKF] soil metagenome; Soil
86
1
-
Leu
TAA
[ENA]
¢þ
>WENV180038841
LLBY010007956
[LLBY] soil metagenome; soil from tomato rhizosphere
22556
22643
+
Leu
TAA
[ENA]
¢þ
>WENV180040832
LLBZ010016014
[LLBZ] soil metagenome; soil from tomato rhizosphere
2761
2674
-
Leu
TAA
[ENA]
¢þ
>WENV180310118
OBJS01234532
[OBJS] beach sand metagenome; beach sand
69
157
+
Leu
TAA
[ENA]
¢þ
>WENV181385842
OFRK01020870
[OFRK] marine metagenome; sea ice
112
197
+
Leu
TAA
[ENA]
¢þ
>WENV183615000
OOEA01027283
[OOEA] marine metagenome; sea ice
276
361
+
Leu
TAA
[ENA]
¢þ
>WENV183621797
OOFU01063293
[OOFU] marine metagenome; sea ice
244
159
-
Leu
TAA
[ENA]
¢þ
>WENV183628336
OOGN01011301
[OOGN] marine metagenome; sea ice
285
200
-
Leu
TAA
[ENA]
¢þ
>WENV170604383
FUWD010391868
[FUWD] metagenome; unknown
238
325
+
Leu
TAA
[ENA]
¢þ
>WENV170639231
JFJP01001703
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6014
6099
+
Leu
TAA
[ENA]
¢þ
>CHL1810002641
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
106399
106486
+
Leu
TAA
[ENA]
¡û
>CHL1810002665
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
100736
100821
+
Leu
TAA
[ENA]
¡û
>CHL1810059419
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
98382
98297
-
Leu
TAA
[ENA]
¡û
>CHL090102736
EF067920
stramenopiles
Phaeodactylum tricornutum
104560
104475
-
Leu
TAA
[ENA]
¡û
Identical group No.81279 (1 seq.)
>CHL090103355
Z67753
stramenopiles
Odontella sinensis
13921
14006
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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