This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
stramenopiles
Anticodon = TGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318999 (37 seq.)
>WENV180082126
MPMC02187665
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
101
176
+
Pro
TGG
[ENA]
¢þ
>WENV180110921
OAPN01013748
[OAPN] marine metagenome; 2011
440
513
+
Pro
TGG
[ENA]
¢þ
>WENV180209326
OBAK01071157
[OBAK] marine metagenome; ENVO.00002150
137
64
-
Pro
TGG
[ENA]
¢þ
>WENV180357381
OBNN01006024
[OBNN] marine metagenome; Coastal water
58
131
+
Pro
TGG
[ENA]
¢þ
>WENV180359223
OBNR01019340
[OBNR] marine metagenome; Seawater_00002010_00002149
328
255
-
Pro
TGG
[ENA]
¢þ
>WENV180365431
OBOB01136145
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
281
354
+
Pro
TGG
[ENA]
¢þ
>WENV180367014
OBOE01003878
[OBOE] marine metagenome; ENVO:00002010
1166
1093
-
Pro
TGG
[ENA]
¢þ
>WENV180368724
OBOF01216209
[OBOF] marine metagenome; ENVO:00002010
125
198
+
Pro
TGG
[ENA]
¢þ
>WENV180368870
OBOG01003631
[OBOG] marine metagenome; seawater
148
75
-
Pro
TGG
[ENA]
¢þ
>WENV180370513
OBOH01117494
[OBOH] marine metagenome; ENVO:00002010
169
96
-
Pro
TGG
[ENA]
¢þ
>WENV180374664
OBOK01005052
[OBOK] marine metagenome; seawater
847
774
-
Pro
TGG
[ENA]
¢þ
>WENV180591032
OCOU01071489
[OCOU] marine metagenome; Water
94
19
-
Pro
TGG
[ENA]
¢þ
>WENV180591379
OCOV01016390
[OCOV] marine metagenome; ENVO:01000301
596
523
-
Pro
TGG
[ENA]
¢þ
>WENV180595794
OCPF01041319
[OCPF] marine metagenome; ENVO.00002150
141
214
+
Pro
TGG
[ENA]
¢þ
>WENV180636723
OCRF01046958
[OCRF] marine metagenome; niskin bottle
324
251
-
Pro
TGG
[ENA]
¢þ
>WENV181367156
OFPV01000877
[OFPV] freshwater metagenome; Freshwater Lake
276
349
+
Pro
TGG
[ENA]
¢þ
>WENV181370262
OFQS01001377
[OFQS] freshwater metagenome; Freshwater Lake
2549
2476
-
Pro
TGG
[ENA]
¢þ
>WENV181392949
OFRX01021876
[OFRX] seawater metagenome; seawater
567
494
-
Pro
TGG
[ENA]
¢þ
>WENV183629320
OOGP01022141
[OOGP] marine metagenome; seawater
567
494
-
Pro
TGG
[ENA]
¢þ
>WENV183630415
OOGS01011526
[OOGS] marine metagenome; seawater
535
462
-
Pro
TGG
[ENA]
¢þ
>WENV183793215
PQDT01050420
[PQDT] marine sediment metagenome; marine sediment
334
407
+
Pro
TGG
[ENA]
¢þ
>WENV170271240
CERI01279356
[CERI] marine metagenome genome assembly TARA_067_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1691
1618
-
Pro
TGG
[ENA]
¢þ
>WENV170275948
CERM01237846
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1155
1082
-
Pro
TGG
[ENA]
¢þ
>WENV170537092
CEWP01347773
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
11711
11638
-
Pro
TGG
[ENA]
¢þ
>WENV170568458
FLMP01041472
[FLMP] seawater metagenome; seawater
1100
1027
-
Pro
TGG
[ENA]
¢þ
>WENV170608979
FUWD011194512
[FUWD] metagenome; unknown
191
264
+
Pro
TGG
[ENA]
¢þ
>WENV170816825
MDSX01038169
[MDSX] marine metagenome; seawater
7013
6940
-
Pro
TGG
[ENA]
¢þ
>CHL1810002582
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
141629
141702
+
Pro
TGG
[ENA]
¡û
>CHL1810002588
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
70460
70387
-
Pro
TGG
[ENA]
¡û
>CHL1810013684
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
126718
126791
+
Pro
TGG
[ENA]
¡û
>CHL1810013693
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
64541
64468
-
Pro
TGG
[ENA]
¡û
>CHL1810013739
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
127458
127531
+
Pro
TGG
[ENA]
¡û
>CHL1810013748
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
64699
64626
-
Pro
TGG
[ENA]
¡û
>CHL1810059531
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
129075
129148
+
Pro
TGG
[ENA]
¡û
>CHL1810059540
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
64921
64848
-
Pro
TGG
[ENA]
¡û
>CHL090102761
EF067921
stramenopiles
Thalassiosira pseudonana
128661
128735
+
Pro
TGG
[ENA]
¡û
>CHL090102770
EF067921
stramenopiles
Thalassiosira pseudonana
65404
65330
-
Pro
TGG
[ENA]
¡û
Identical group No.353727 (11 seq.)
>WENV180108812
OAPI01001560
[OAPI] marine metagenome; ENVO.00002150
482
409
-
Pro
TGG
[ENA]
¢þ
>WENV180363592
OBNY01124138
[OBNY] marine metagenome; ENVO:00002010
303
376
+
Pro
TGG
[ENA]
¢þ
>WENV180368134
OBOF01027659
[OBOF] marine metagenome; ENVO:00002010
57
131
+
Pro
TGG
[ENA]
¢þ
>WENV180637740
OCRG01105936
[OCRG] marine metagenome; seawater
100
173
+
Pro
TGG
[ENA]
¢þ
>WENV183620258
OOFR01018965
[OOFR] marine metagenome; seawater
538
612
+
Pro
TGG
[ENA]
¢þ
>CHL1810008304
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
64271
64346
+
Pro
TGG
[ENA]
¡û
>CHL1810008307
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
118345
118270
-
Pro
TGG
[ENA]
¡û
>CHL1810008415
KC509525
Stramenopiles
Lithodesmium undulatum ccmp1797 (KC509525)
121843
121918
+
Pro
TGG
[ENA]
¡û
>CHL1810008423
KC509525
Stramenopiles
Lithodesmium undulatum ccmp1797 (KC509525)
61904
61829
-
Pro
TGG
[ENA]
¡û
>CHL090103350
Z67753
stramenopiles
Odontella sinensis
267
341
+
Pro
TGG
[ENA]
¡û
>CHL090103373
Z67753
stramenopiles
Odontella sinensis
54092
54018
-
Pro
TGG
[ENA]
¡û
Identical group No.421698 (4 seq.)
>CHL1810002635
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
62666
62741
+
Pro
TGG
[ENA]
¡û
>CHL1810002642
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
116328
116253
-
Pro
TGG
[ENA]
¡û
>CHL090102727
EF067920
stramenopiles
Phaeodactylum tricornutum
63784
63859
+
Pro
TGG
[ENA]
¡û
>CHL090102732
EF067920
stramenopiles
Phaeodactylum tricornutum
117260
117185
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK