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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
stramenopiles
Anticodon = TGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.662117 (46 seq.)
>WENV180038601
LLBY010000546
[LLBY] soil metagenome; soil from tomato rhizosphere
56036
55965
-
Thr
TGT
[ENA]
¢þ
>WENV180111079
OAPN01027033
[OAPN] marine metagenome; 2011
404
477
+
Thr
TGT
[ENA]
¢þ
>WENV180367703
OBOF01001320
[OBOF] marine metagenome; ENVO:00002010
1509
1582
+
Thr
TGT
[ENA]
¢þ
>WENV180368883
OBOG01004226
[OBOG] marine metagenome; seawater
328
401
+
Thr
TGT
[ENA]
¢þ
>WENV180375450
OBOL01011963
[OBOL] marine metagenome; Surface water
439
368
-
Thr
TGT
[ENA]
¢þ
>WENV180588355
OCOP01035058
[OCOP] marine metagenome; water
329
258
-
Thr
TGT
[ENA]
¢þ
>WENV180591200
OCOV01003377
[OCOV] marine metagenome; ENVO:01000301
682
755
+
Thr
TGT
[ENA]
¢þ
>WENV180594089
OCOY01033585
[OCOY] marine metagenome; ENVO:00002010
301
228
-
Thr
TGT
[ENA]
¢þ
>WENV181162818
OEIO01018292
[OEIO] marine metagenome; sea ice
246
317
+
Thr
TGT
[ENA]
¢þ
>WENV181309910
OFIY01006090
[OFIY] marine metagenome; sea ice
607
536
-
Thr
TGT
[ENA]
¢þ
>WENV181324330
OFLD01021068
[OFLD] marine metagenome; sea ice
273
202
-
Thr
TGT
[ENA]
¢þ
>WENV181324871
OFLH01022503
[OFLH] marine metagenome; sea ice
336
407
+
Thr
TGT
[ENA]
¢þ
>WENV181325884
OFLJ01042554
[OFLJ] seawater metagenome; seawater
354
425
+
Thr
TGT
[ENA]
¢þ
>WENV181392786
OFRX01005533
[OFRX] seawater metagenome; seawater
287
214
-
Thr
TGT
[ENA]
¢þ
>WENV183615312
OOEB01002227
[OOEB] marine metagenome; sea ice
450
521
+
Thr
TGT
[ENA]
¢þ
>WENV183615889
OOEC01000835
[OOEC] marine metagenome; sea ice
3307
3378
+
Thr
TGT
[ENA]
¢þ
>WENV183615923
OOEC01005551
[OOEC] marine metagenome; sea ice
281
352
+
Thr
TGT
[ENA]
¢þ
>WENV183616737
OOEE01000119
[OOEE] marine metagenome; sea ice
280
351
+
Thr
TGT
[ENA]
¢þ
>WENV183617436
OOEE01291275
[OOEE] marine metagenome; sea ice
11
82
+
Thr
TGT
[ENA]
¢þ
>WENV183617697
OOEG01048730
[OOEG] marine metagenome; sea ice
338
267
-
Thr
TGT
[ENA]
¢þ
>WENV183619750
OOFQ01043846
[OOFQ] marine metagenome; seawater
354
425
+
Thr
TGT
[ENA]
¢þ
>WENV183621097
OOFT01006318
[OOFT] marine metagenome; sea ice
533
606
+
Thr
TGT
[ENA]
¢þ
>WENV183622743
OOFW01004695
[OOFW] marine metagenome; sea ice
93
22
-
Thr
TGT
[ENA]
¢þ
>WENV183624321
OOGD01001103
[OOGD] marine metagenome; sea ice
329
400
+
Thr
TGT
[ENA]
¢þ
>WENV183624965
OOGE01048819
[OOGE] marine metagenome; sea ice
146
217
+
Thr
TGT
[ENA]
¢þ
>WENV183628236
OOGN01000363
[OOGN] marine metagenome; sea ice
4510
4439
-
Thr
TGT
[ENA]
¢þ
>WENV183629234
OOGP01011883
[OOGP] marine metagenome; seawater
287
214
-
Thr
TGT
[ENA]
¢þ
>WENV183631082
OOGU01026982
[OOGU] marine metagenome; sea ice
353
424
+
Thr
TGT
[ENA]
¢þ
>WENV183793266
PQDT01144467
[PQDT] marine sediment metagenome; marine sediment
204
131
-
Thr
TGT
[ENA]
¢þ
>WENV170024575
BCQL01077975
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
106
177
+
Thr
TGT
[ENA]
¢þ
>WENV170622284
FUWD013096067
[FUWD] metagenome; unknown
2071
2144
+
Thr
TGT
[ENA]
¢þ
>WENV170630499
FUWD013310666
[FUWD] metagenome; unknown
2071
2144
+
Thr
TGT
[ENA]
¢þ
>WENV170639253
JFJP01001711
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4219
4148
-
Thr
TGT
[ENA]
¢þ
>WENV170647069
JQIA01009297
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
324
251
-
Thr
TGT
[ENA]
¢þ
>CHL1810002597
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
968
897
-
Thr
TGT
[ENA]
¡û
>CHL1810002628
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
16392
16465
+
Thr
TGT
[ENA]
¡û
>CHL1810002655
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
18503
18576
+
Thr
TGT
[ENA]
¡û
>CHL1810005314
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
16105
16032
-
Thr
TGT
[ENA]
¡û
>CHL1810008288
KC509520
Stramenopiles
Asterionellopsis glacialis ccmp1717 (KC509520)
13998
13927
-
Thr
TGT
[ENA]
¡û
>CHL1810008341
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
55599
55528
-
Thr
TGT
[ENA]
¡û
>CHL1810013612
KJ958479
Stramenopiles
Chaetoceros simplex (KJ958479)
21003
21074
+
Thr
TGT
[ENA]
¡û
>CHL1810013674
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
48561
48635
+
Thr
TGT
[ENA]
¡û
>CHL1810013729
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
48407
48480
+
Thr
TGT
[ENA]
¡û
>CHL1810059373
MG755798
Stramenopiles
Attheya longicornis (MG755798)
25618
25547
-
Thr
TGT
[ENA]
¡û
>CHL1810059521
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
48697
48770
+
Thr
TGT
[ENA]
¡û
>CHL090102751
EF067921
stramenopiles
Thalassiosira pseudonana
49110
49183
+
Thr
TGT
[ENA]
¡û
Identical group No.667354 (20 seq.)
>WENV181306870
OFIN01011365
[OFIN] marine metagenome; sea ice
64
135
+
Thr
TGT
[ENA]
¢þ
>WENV181322119
OFKP01008125
[OFKP] marine metagenome; sea ice
728
657
-
Thr
TGT
[ENA]
¢þ
>WENV181322872
OFKV01004663
[OFKV] marine metagenome; sea ice
873
802
-
Thr
TGT
[ENA]
¢þ
>WENV183616069
OOEC01047587
[OOEC] marine metagenome; sea ice
319
390
+
Thr
TGT
[ENA]
¢þ
>WENV183616263
OOEC01250991
[OOEC] marine metagenome; sea ice
74
3
-
Thr
TGT
[ENA]
¢þ
>WENV183621138
OOFT01009063
[OOFT] marine metagenome; sea ice
815
744
-
Thr
TGT
[ENA]
¢þ
>WENV183621935
OOFV01000906
[OOFV] marine metagenome; seawater
3635
3562
-
Thr
TGT
[ENA]
¢þ
>WENV183622651
OOFW01000770
[OOFW] marine metagenome; sea ice
2573
2502
-
Thr
TGT
[ENA]
¢þ
>WENV183622977
OOFX01000203
[OOFX] marine metagenome; sea ice
4689
4616
-
Thr
TGT
[ENA]
¢þ
>WENV183623372
OOFY01001454
[OOFY] marine metagenome; sea ice
278
349
+
Thr
TGT
[ENA]
¢þ
>WENV183624426
OOGD01008970
[OOGD] marine metagenome; sea ice
344
415
+
Thr
TGT
[ENA]
¢þ
>WENV170270892
CERI01144489
[CERI] marine metagenome genome assembly TARA_067_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
429
501
+
Thr
TGT
[ENA]
¢þ
>WENV170275853
CERM01223075
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
584
512
-
Thr
TGT
[ENA]
¢þ
>WENV170535823
CEWP01110274
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3095
3023
-
Thr
TGT
[ENA]
¢þ
>WENV170568792
FLMP01079312
[FLMP] seawater metagenome; seawater
428
499
+
Thr
TGT
[ENA]
¢þ
>CHL1810008350
KC509523
Stramenopiles
Didymosphenia geminata BCC011 (KC509523)
16692
16765
+
Thr
TGT
[ENA]
¡û
>CHL1810008408
KC509525
Stramenopiles
Lithodesmium undulatum ccmp1797 (KC509525)
47874
47947
+
Thr
TGT
[ENA]
¡û
>CHL1810013721
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
8840
8767
-
Thr
TGT
[ENA]
¡û
>CHL1810059303
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
64080
64151
+
Thr
TGT
[ENA]
¡û
>CHL090102721
EF067920
stramenopiles
Phaeodactylum tricornutum
16589
16660
+
Thr
TGT
[ENA]
¡û
Identical group No.813217 (1 seq.)
>CHL090103361
Z67753
stramenopiles
Odontella sinensis
66647
66717
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK