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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified Herelleviridae
Anticodon = TGT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.561426 (1 seq.)
>PHG181000818
KP054477
unclassified Herelleviridae
Lactobacillus phage LfeInf (KP054477)
30709
30637
-
Thr
TGT
[ENA]
¡û
Identical group No.781679 (2 seq.)
>PHG0300057
AY682195
Myoviridae
Lactobacillus virus LP65 ATCC 11303-B5 (AY682195)
49847
49777
-
Thr
TGT
[ENA]
¡û
>PHG183001397
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
86427
86357
-
Thr
TGT
[ENA]
¡û
Identical group No.786870 (1 seq.)
>PHG181007262
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
23707
23635
-
Thr
TGT
[ENA]
¡û
Identical group No.823677 (1 seq.)
>PHG183001059
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
136629
136557
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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