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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified Herelleviridae
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7660 (1 seq.)
>PHG181006126
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
138863
138772
-
Ile
TAT
[ENA]
¡û
Identical group No.11904 (1 seq.)
>PHG181007264
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
88654
88564
-
Ile
TAT
[ENA]
¡û
Identical group No.25376 (1 seq.)
>PHG181000819
KP054477
unclassified Herelleviridae
Lactobacillus phage LfeInf (KP054477)
30562
30472
-
Ser
GCT
[ENA]
¡û
Identical group No.32585 (1 seq.)
>PHG181007257
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
25743
25656
-
Ser
GCT
[ENA]
¡û
Identical group No.42531 (1 seq.)
>PHG181006127
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
138763
138674
-
Ser
GCT
[ENA]
¡û
Identical group No.244047 (2 seq.)
>PHG183001057
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
137452
137376
-
Leu
TAA
[ENA]
¡û
>PHG183001393
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
25093
25017
-
Leu
TAA
[ENA]
¡û
Identical group No.297296 (1 seq.)
>PHG183001390
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
26645
26570
-
Arg
TCT
[ENA]
¡û
Identical group No.297351 (1 seq.)
>PHG181007259
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
25431
25356
-
Leu
TAG
[ENA]
¡û
Identical group No.297352 (2 seq.)
>PHG181006129
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
137165
137092
-
Leu
CAA
[ENA]
¡û
>PHG181007260
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
24806
24733
-
Leu
CAA
[ENA]
¡û
Identical group No.369930 (2 seq.)
>WENV170659279
JXWR01002552
[JXWR] soil metagenome; rice field; ambient CO2
18294
18367
+
Phe
GAA
[ENA]
¢þ
>PHG181007268
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
87296
87223
-
Phe
GAA
[ENA]
¡û
Identical group No.414298 (1 seq.)
>PHG181006124
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
139699
139626
-
Arg
TCT
[ENA]
¡û
Identical group No.414299 (1 seq.)
>PHG181006128
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
137792
137717
-
Leu
TAG
[ENA]
¡û
Identical group No.414300 (1 seq.)
>PHG181006131
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
136704
136631
-
Pro
TGG
[ENA]
¡û
Identical group No.438753 (1 seq.)
>PHG181007267
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
87525
87450
-
Leu
CAA
[ENA]
¡û
Identical group No.480679 (2 seq.)
>PHG183001058
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
137078
137006
-
Phe
GAA
[ENA]
¡û
>PHG183001394
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
24719
24647
-
Phe
GAA
[ENA]
¡û
Identical group No.480747 (1 seq.)
>PHG181007255
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
26477
26403
-
Arg
CCT
[ENA]
¡û
Identical group No.480748 (1 seq.)
>PHG181007258
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
25628
25554
-
Asn
GTT
[ENA]
¡û
Identical group No.480749 (1 seq.)
>PHG181007261
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
23786
23712
-
Trp
CCA
[ENA]
¡û
Identical group No.480750 (1 seq.)
>PHG181007263
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
23482
23410
-
Gly
TCC
[ENA]
¡û
Identical group No.561426 (1 seq.)
>PHG181000818
KP054477
unclassified Herelleviridae
Lactobacillus phage LfeInf (KP054477)
30709
30637
-
Thr
TGT
[ENA]
¡û
Identical group No.611204 (1 seq.)
>PHG181006125
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
139402
139328
-
Arg
CCT
[ENA]
¡û
Identical group No.611205 (1 seq.)
>PHG181006130
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
136798
136724
-
Trp
CCA
[ENA]
¡û
Identical group No.638993 (1 seq.)
>PHG183001395
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
89043
88969
-
Arg
CCT
[ENA]
¡û
Identical group No.639006 (1 seq.)
>PHG181007266
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
87608
87534
-
Leu
TAG
[ENA]
¡û
Identical group No.639007 (1 seq.)
>PHG181007269
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
86613
86539
-
Trp
CCA
[ENA]
¡û
Identical group No.639008 (1 seq.)
>PHG181007270
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
86339
86267
-
Gly
TCC
[ENA]
¡û
Identical group No.669956 (1 seq.)
>PHG181007256
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
26089
26018
-
Ile
TAT
[ENA]
¡û
Identical group No.750754 (1 seq.)
>PHG183001054
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
137988
137915
-
Asn
GTT
[ENA]
¡û
Identical group No.770387 (1 seq.)
>PHG185000292
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
89203
89132
-
Arg
TCT
[ENA]
¡û
Identical group No.770398 (1 seq.)
>PHG181007265
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
87752
87679
-
Asn
GTT
[ENA]
¡û
Identical group No.781679 (2 seq.)
>PHG0300057
AY682195
Myoviridae
Lactobacillus virus LP65 ATCC 11303-B5 (AY682195)
49847
49777
-
Thr
TGT
[ENA]
¡û
>PHG183001397
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
86427
86357
-
Thr
TGT
[ENA]
¡û
Identical group No.786870 (1 seq.)
>PHG181007262
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
23707
23635
-
Thr
TGT
[ENA]
¡û
Identical group No.823677 (1 seq.)
>PHG183001059
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
136629
136557
-
Thr
TGT
[ENA]
¡û
Identical group No.823678 (1 seq.)
>PHG183001060
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
136402
136332
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK