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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified archaeal dsDNA viruses
Anticodon = TCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256624 (2 seq.)
>PHG0100031
AF222060
unclassified archaeal dsDNA viruses
Halorubrum phage HF2 ECOR-9 (AF222060)
18508
18584
+
Arg
TCT
[ENA]
¡û
>PHG0100230
AY190604
unclassified archaeal dsDNA viruses
Halovirus HF1 PaP3 (AY190604)
18508
18584
+
Arg
TCT
[ENA]
¡û
Identical group No.263903 (1 seq.)
>PHG14102109
KC292022
unclassified archaeal dsDNA viruses
Halovirus HRTV-5 Gb1 (KC292022)
58168
58092
-
Arg
TCT
[ENA]
¡û
Identical group No.620391 (1 seq.)
>PHG14102124
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
46430
46355
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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