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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified archaeal dsDNA viruses
Anticodon = TGG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653921 (1 seq.)
>PHG14102104
KC292020
unclassified archaeal dsDNA viruses
Halovirus HRTV-8 Gb1 (KC292020)
3000
3071
+
Pro
TGG
[ENA]
¡û
Identical group No.751560 (1 seq.)
>PHG14102108
KC292022
unclassified archaeal dsDNA viruses
Halovirus HRTV-5 Gb1 (KC292022)
2936
3007
+
Pro
TGG
[ENA]
¡û
Identical group No.809982 (2 seq.)
>PHG0100033
AF222060
unclassified archaeal dsDNA viruses
Halorubrum phage HF2 ECOR-9 (AF222060)
74699
74628
-
Pro
TGG
[ENA]
¡û
>PHG0100232
AY190604
unclassified archaeal dsDNA viruses
Halovirus HF1 PaP3 (AY190604)
72927
72856
-
Pro
TGG
[ENA]
¡û
Identical group No.826225 (1 seq.)
>PHG14102127
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
42840
42770
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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